Variant report

Variant	rs55887730
Chromosome Location	chr3:135210362-135210363
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10935169	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11915681	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11915808	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12486878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12488558	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12497034	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17187040	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17246571	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17246773	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6766954	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs698267	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs711964	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs711966	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73229924	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73229925	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs824096	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs824284	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs863734	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135206400-135214400	Weak transcription	Spleen	Spleen
2	chr3:135209600-135210600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:135209600-135211600	Weak transcription	Fetal Brain Female	brain
4	chr3:135210000-135210400	Weak transcription	Psoas Muscle	Psoas
5	chr3:135210200-135221400	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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