Variant report

Variant	rs17246773
Chromosome Location	chr3:135221968-135221969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10935169	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11915681	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11915808	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12486878	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12488558	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12497034	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16842962	1.00[ASN][1000 genomes]
rs17187040	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17246571	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55887730	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6766954	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs698267	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs711964	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs711966	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73229924	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73229925	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs824096	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs824284	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs863734	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9834357	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv527433	chr3:135221504-135225249	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518089	chr3:135221504-135232994	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135210600-135222600	Weak transcription	Psoas Muscle	Psoas
2	chr3:135221400-135222000	Enhancers	Fetal Brain Male	brain
3	chr3:135221400-135222400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr3:135221400-135223400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:135221600-135222000	Enhancers	Brain Germinal Matrix	brain
6	chr3:135221800-135222000	Enhancers	Fetal Brain Female	brain
7	chr3:135221800-135222200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:135221800-135223000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links