Variant report

Variant	rs9834357
Chromosome Location	chr3:135340074-135340075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12695632	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1401546	1.00[ASN][1000 genomes]
rs1401547	1.00[ASN][1000 genomes]
rs17246773	1.00[ASN][1000 genomes]
rs2044569	1.00[ASN][1000 genomes]
rs2139288	1.00[ASN][1000 genomes]
rs9826230	1.00[ASN][1000 genomes]
rs9835179	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9851443	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9866627	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9871437	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9873976	1.00[ASN][1000 genomes]
rs9876792	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9876916	1.00[ASN][1000 genomes]
rs9880138	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135337600-135340200	Weak transcription	Psoas Muscle	Psoas
2	chr3:135338200-135340200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:135340000-135342800	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links