Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12695632	0.89[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345154	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1401546	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401547	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447595	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2139288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766026	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802276	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72975658	0.95[EUR][1000 genomes]
rs9826230	1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834357	1.00[ASN][1000 genomes]
rs9834536	0.98[EUR][1000 genomes]
rs9835179	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851443	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866627	0.88[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9871437	0.88[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873976	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876792	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876916	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880138	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135451200-135482000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:135481200-135481800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:135481400-135482400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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