Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12695632	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1345154	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1401546	0.89[EUR][1000 genomes]
rs1401547	0.89[EUR][1000 genomes]
rs1447595	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2044569	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2139288	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2176668	0.92[ASN][1000 genomes]
rs3920305	0.92[ASN][1000 genomes]
rs59933266	0.92[ASN][1000 genomes]
rs6796653	0.92[ASN][1000 genomes]
rs6802276	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72975639	0.91[ASN][1000 genomes]
rs72975658	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627163	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9826230	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9834536	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9835179	0.89[EUR][1000 genomes]
rs9851443	0.89[EUR][1000 genomes]
rs9865234	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9866627	0.88[CEU][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes]
rs9871437	0.88[CEU][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes]
rs9873976	0.89[EUR][1000 genomes]
rs9876792	0.84[EUR][1000 genomes]
rs9876916	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135513800-135514600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:135514200-135514600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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