Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12695632	0.89[EUR][1000 genomes]
rs1401546	0.84[EUR][1000 genomes]
rs1401547	0.84[EUR][1000 genomes]
rs1447595	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2044569	0.95[EUR][1000 genomes]
rs2139288	0.95[EUR][1000 genomes]
rs2176668	0.92[ASN][1000 genomes]
rs3920305	0.92[ASN][1000 genomes]
rs59933266	0.92[ASN][1000 genomes]
rs6766026	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796653	0.92[ASN][1000 genomes]
rs72975639	0.91[ASN][1000 genomes]
rs7627163	0.91[ASN][1000 genomes]
rs9826230	0.84[EUR][1000 genomes]
rs9834536	0.94[EUR][1000 genomes]
rs9835179	0.84[EUR][1000 genomes]
rs9851443	0.84[EUR][1000 genomes]
rs9866627	0.89[EUR][1000 genomes]
rs9871437	0.89[EUR][1000 genomes]
rs9873976	0.84[EUR][1000 genomes]
rs9876792	0.89[EUR][1000 genomes]
rs9876916	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135519200-135522000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr3:135521000-135523800	Weak transcription	Fetal Brain Female	brain
3	chr3:135521600-135524800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:135521800-135522000	Enhancers	Fetal Brain Male	brain
5	chr3:135521800-135522200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:135521800-135522400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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