Variant report

Variant	rs6796653
Chromosome Location	chr3:135524846-135524847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13316015	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16843365	0.84[ASN][1000 genomes]
rs1965185	0.81[EUR][1000 genomes]
rs2176668	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3920305	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57767257	0.84[ASN][1000 genomes]
rs59933266	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789024	0.84[ASN][1000 genomes]
rs6766026	0.92[ASN][1000 genomes]
rs72975639	0.83[ASN][1000 genomes]
rs72975658	0.92[ASN][1000 genomes]
rs7427644	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7627163	0.83[ASN][1000 genomes]
rs9815638	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865234	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135522200-135526800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:135522400-135526600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:135523800-135525600	Enhancers	Fetal Brain Female	brain
4	chr3:135524200-135525200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:135524400-135526000	Enhancers	Fetal Brain Male	brain
6	chr3:135524600-135526000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:135524800-135525600	Enhancers	Fetal Muscle Leg	muscle
8	chr3:135524800-135525800	Enhancers	Fetal Muscle Trunk	muscle
9	chr3:135524800-135526000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:135524800-135526000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:135524800-135527800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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