Variant report

Variant	rs13316015
Chromosome Location	chr3:135508605-135508606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11718972	1.00[CHD][hapmap]
rs1965185	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2176668	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3920305	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59933266	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6796653	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6802942	1.00[CHB][hapmap]
rs7427644	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9815638	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865234	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs9866627	1.00[CHD][hapmap]
rs9871437	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13316015	KY	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135502000-135511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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