Variant report
| Variant | rs9834536 |
|---|---|
| Chromosome Location | chr3:135487974-135487975 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:135487293..135489602-chr6:109760699..109763657,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135587 | Chromatin interaction |
| ENSG00000185250 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12695632 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1345154 | 0.82[EUR][1000 genomes] |
| rs1401546 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1401547 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1447595 | 0.91[EUR][1000 genomes] |
| rs2044569 | 0.98[EUR][1000 genomes] |
| rs2139288 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6766026 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6802276 | 0.82[EUR][1000 genomes] |
| rs72975658 | 0.94[EUR][1000 genomes] |
| rs9826230 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9835179 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9851443 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9866627 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9871437 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9873976 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9876792 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9876916 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9880138 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460860 | chr3:135107678-135769006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv591829 | chr3:135107678-135769006 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
