Variant report

Variant	rs1345154
Chromosome Location	chr3:135473573-135473574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12695632	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1401546	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1401547	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1447595	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2044569	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2139288	0.83[EUR][1000 genomes]
rs6766026	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6802276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427644	0.83[ASN][1000 genomes]
rs9826230	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9834536	0.82[EUR][1000 genomes]
rs9835179	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9851443	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9866627	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9871437	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9873976	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9876792	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9876916	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9880138	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135451200-135482000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:135473400-135473600	Enhancers	Brain Germinal Matrix	brain
3	chr3:135473400-135476000	Enhancers	Fetal Brain Female	brain
4	chr3:135473400-135476200	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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