Variant report

Variant	rs558880420
Chromosome Location	chr9:140319329-140319330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:140319189-140319612	HCT-116	colon:	n/a	n/a
2	RCOR1	chr9:140319228-140319690	K562	blood:	n/a	n/a
3	USF2	chr9:140319242-140319605	Hela-S3	cervix:	n/a	chr9:140319422-140319435 chr9:140319422-140319433
4	TAL1	chr9:140319062-140319753	K562	blood:	n/a	chr9:140319392-140319401
5	USF1	chr9:140319219-140319533	A549	lung:	n/a	chr9:140319422-140319435
6	HCFC1	chr9:140316535-140319477	Hela-S3	cervix:	n/a	n/a
7	USF1	chr9:140319189-140319527	A549	lung:	n/a	chr9:140319422-140319435
8	FOS	chr9:140319208-140319592	MCF10A-Er-Src	breast:	n/a	n/a
9	POU2F2	chr9:140319247-140319520	GM12878	blood:	n/a	chr9:140319356-140319370
10	MYC	chr9:140319208-140319569	MCF10A-Er-Src	breast:	n/a	chr9:140319423-140319432 chr9:140319424-140319433
11	USF1	chr9:140319251-140319498	SK-N-SH_RA	brain:	n/a	chr9:140319422-140319435
12	USF1	chr9:140319037-140319775	HCT-116	colon:	n/a	chr9:140319422-140319435
13	POLR2A	chr9:140319252-140319778	HL-60	blood:	n/a	n/a
14	POLR2A	chr9:140319171-140319592	HCT-116	colon:	n/a	n/a
15	FOS	chr9:140319142-140319628	MCF10A-Er-Src	breast:	n/a	n/a
16	USF1	chr9:140319047-140319729	HCT-116	colon:	n/a	chr9:140319422-140319435
17	MAX	chr9:140319168-140319579	K562	blood:	n/a	chr9:140319423-140319432 chr9:140319424-140319433
18	STAT3	chr9:140319211-140319449	MCF10A-Er-Src	breast:	n/a	n/a
19	FOS	chr9:140319174-140319591	MCF10A-Er-Src	breast:	n/a	n/a
20	JUN	chr9:140316699-140319986	K562	blood:	n/a	chr9:140318374-140318384 chr9:140318301-140318310 chr9:140318373-140318385 chr9:140317114-140317125 chr9:140318374-140318384 chr9:140318374-140318384 chr9:140318374-140318383 chr9:140318374-140318384
21	USF1	chr9:140319219-140319609	SK-N-SH	brain:	n/a	chr9:140319422-140319435
22	IKZF1	chr9:140319236-140319536	GM12878	blood:	n/a	n/a
23	BHLHE40	chr9:140319221-140319723	GM12878	blood:	n/a	chr9:140319422-140319435
24	MYC	chr9:140319209-140319543	MCF10A-Er-Src	breast:	n/a	chr9:140319423-140319432 chr9:140319424-140319433
25	USF2	chr9:140319281-140319576	GM12878	blood:	n/a	chr9:140319422-140319435 chr9:140319422-140319433
26	MAX	chr9:140319243-140319587	K562	blood:	n/a	chr9:140319423-140319432 chr9:140319424-140319433
27	CTCF	chr9:140319220-140319370	HCPEpiC	choroid plexus:	n/a	n/a
28	POLR2A	chr9:140319205-140319424	MCF10A-Er-Src	breast:	n/a	n/a
29	FOS	chr9:140319261-140319681	MCF10A-Er-Src	breast:	n/a	n/a
30	USF1	chr9:140319314-140319558	SK-N-SH_RA	brain:	n/a	chr9:140319422-140319435
31	USF1	chr9:140319170-140319577	K562	blood:	n/a	chr9:140319422-140319435
32	USF1	chr9:140319175-140319599	K562	blood:	n/a	chr9:140319422-140319435
33	TCF3	chr9:140319288-140319715	GM12878	blood:	n/a	n/a
34	TBP	chr9:140319225-140319490	K562	blood:	n/a	n/a
35	POU2F2	chr9:140319229-140319641	GM12891	blood:	n/a	chr9:140319356-140319370
36	CTCF	chr9:140319220-140319370	AG04449	skin:	n/a	n/a
37	STAT3	chr9:140319219-140319382	MCF10A-Er-Src	breast:	n/a	n/a
38	BHLHE40	chr9:140319133-140319761	K562	blood:	n/a	chr9:140319422-140319435
39	JUND	chr9:140319198-140319665	K562	blood:	n/a	n/a
40	MAZ	chr9:140319273-140319606	K562	blood:	n/a	chr9:140319423-140319432 chr9:140319424-140319433
41	ATF3	chr9:140319258-140319566	K562	blood:	n/a	chr9:140319424-140319433
42	POLR2A	chr9:140319124-140319737	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:140193633..140197906-chr9:140314272..140320023,12	K562	blood:
2	chr9:140316188..140319616-chr9:140334398..140338058,5	MCF-7	breast:
3	chr9:140188697..140191743-chr9:140316261..140319603,8	MCF-7	breast:
4	chr9:140316974..140319739-chr9:140351873..140353918,3	MCF-7	breast:
5	chr9:140191868..140203757-chr9:140310976..140322315,40	MCF-7	breast:
6	chr9:140192198..140198165-chr9:140316235..140327530,20	K562	blood:
7	chr9:140189132..140191580-chr9:140319161..140320665,2	K562	blood:
8	chr9:140319288..140321017-chr9:140351313..140353220,2	K562	blood:
9	chr9:140187746..140203383-chr9:140313735..140333462,78	MCF-7	breast:
10	chr9:140304116..140306479-chr9:140318996..140322047,3	K562	blood:
11	chr9:140142701..140144932-chr9:140317932..140319730,2	MCF-7	breast:
12	chr9:140310300..140312402-chr9:140318034..140320009,2	MCF-7	breast:

Variant related genes	Relation type
EXD3	TF binding region
ENSG00000188833	Chromatin interaction
ENSG00000260996	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000165802	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
3	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
4	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
6	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
7	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
8	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
9	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
10	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
11	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
12	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
13	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
14	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
15	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
16	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
17	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
18	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
19	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
20	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
21	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
22	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
23	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
24	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
25	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
26	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
27	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
28	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
29	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
30	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
31	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
32	nsv894610	chr9:140018138-140408904	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
33	nsv894625	chr9:140068342-140339091	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
34	nsv894626	chr9:140068342-140368860	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
35	nsv894627	chr9:140068342-140382705	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
36	nsv894628	chr9:140068342-140400275	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
37	nsv894638	chr9:140094605-140368860	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
38	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
39	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
40	esv1824250	chr9:140118448-140390615	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	230 gene(s)	inside rSNPs	diseases
41	nsv894645	chr9:140165584-140408904	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
42	esv1824017	chr9:140197784-140341751	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
43	esv2758205	chr9:140197784-140341751	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
44	esv2759721	chr9:140197784-140341751	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
45	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
46	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
47	nsv894653	chr9:140228092-140343189	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
48	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
49	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
50	nsv894654	chr9:140243547-140382705	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140318000-140319600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:140318400-140319400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:140318400-140319600	Flanking Active TSS	Duodenum Mucosa	Duodenum
4	chr9:140318400-140319600	Enhancers	Placenta	Placenta
5	chr9:140318400-140319600	Flanking Active TSS	Hela-S3	cervix
6	chr9:140318400-140319600	Enhancers	NH-A	brain
7	chr9:140318400-140319800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:140318400-140319800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:140318400-140319800	Enhancers	NHDF-Ad	bronchial
10	chr9:140318400-140320600	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:140318400-140320800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:140318600-140319400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:140318600-140319400	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr9:140318600-140319600	Enhancers	HSMMtube	muscle
15	chr9:140318600-140319600	Flanking Active TSS	K562	blood
16	chr9:140318600-140319600	Enhancers	NHLF	lung
17	chr9:140318600-140320800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:140318600-140321000	Enhancers	HMEC	breast
19	chr9:140318600-140325000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr9:140318600-140335800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:140318800-140319400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:140318800-140319400	Enhancers	Brain Angular Gyrus	brain
23	chr9:140318800-140319400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr9:140318800-140319400	Enhancers	Lung	lung
25	chr9:140318800-140319600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:140318800-140319600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:140318800-140319600	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr9:140318800-140319600	Enhancers	Adipose Nuclei	Adipose
29	chr9:140318800-140319600	Enhancers	Fetal Muscle Leg	muscle
30	chr9:140318800-140319600	Enhancers	Gastric	stomach
31	chr9:140318800-140319600	Enhancers	Left Ventricle	heart
32	chr9:140318800-140319800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr9:140318800-140319800	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:140318800-140319800	Enhancers	HSMM	muscle
35	chr9:140318800-140320000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr9:140318800-140320200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:140318800-140320400	Weak transcription	Spleen	Spleen
38	chr9:140318800-140320600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:140318800-140320800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:140318800-140320800	Enhancers	Esophagus	oesophagus
41	chr9:140318800-140320800	Enhancers	Pancreas	Pancrea
42	chr9:140318800-140321000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr9:140318800-140322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:140318800-140322600	Weak transcription	Primary B cells from cord blood	blood
45	chr9:140318800-140323400	Weak transcription	Stomach Mucosa	stomach
46	chr9:140318800-140324000	Weak transcription	Ovary	ovary
47	chr9:140318800-140324600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr9:140318800-140329200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:140318800-140329600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr9:140318800-140330800	Weak transcription	Brain Hippocampus Middle	brain

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