Variant report

Variant	rs55889677
Chromosome Location	chr6:142961081-142961082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142959399..142961716-chr6:143264721..143266278,2	MCF-7	breast:
2	chr6:142959534..142961116-chr6:142964658..142966443,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10484589	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11968407	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12663303	0.89[EUR][1000 genomes]
rs17071903	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17071909	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1876844	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs196354	0.80[ASN][1000 genomes]
rs2136518	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2136519	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2175164	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55671842	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55702719	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55747254	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55749277	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55767236	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55787572	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56017506	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56019737	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56043044	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56049518	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56055844	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56082312	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56135811	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56196468	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56216981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228013	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56267414	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56358606	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56363136	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72982458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72982478	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984344	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984346	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984357	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72996359	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72996364	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72996365	0.83[ASN][1000 genomes]
rs72998326	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998327	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998328	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998329	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998335	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998337	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998353	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998356	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998364	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998367	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998369	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998371	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998375	0.89[EUR][1000 genomes]
rs72998382	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998384	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998386	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998388	0.83[EUR][1000 genomes]
rs72998391	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998393	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72998399	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72998400	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72998402	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7759477	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7772506	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9376698	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142959400-142967200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:142960000-142967200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links