Variant report

Variant	rs55749277
Chromosome Location	chr6:142944092-142944093
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10484589	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11968407	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12663303	1.00[EUR][1000 genomes]
rs17071903	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17071909	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1876844	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs196354	0.94[ASN][1000 genomes]
rs2136517	0.85[EUR][1000 genomes]
rs2136518	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671842	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55702719	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55747254	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55767236	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55787572	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55889677	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56017506	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56019737	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56043044	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56049518	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56055844	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56082312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56135811	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56196468	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56216981	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56228013	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56267414	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56358606	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56363136	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72982458	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72982478	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72984344	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72984346	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72984357	0.83[EUR][1000 genomes]
rs72994122	0.89[EUR][1000 genomes]
rs72994141	0.89[EUR][1000 genomes]
rs72996359	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72996364	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72996365	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998326	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998327	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998328	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998329	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998335	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998337	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998353	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998356	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998364	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998369	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998371	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998375	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72998382	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998384	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998386	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998388	0.94[EUR][1000 genomes]
rs72998391	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998393	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72998399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759477	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772506	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376698	1.00[EUR][1000 genomes]
rs9376700	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142938800-142945800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:142943600-142944200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:142943600-142944600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:142943800-142944600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:142943800-142945000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:142944000-142944400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:142944000-142944600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:142944000-142944800	Enhancers	Stomach Mucosa	stomach

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