Variant report

Variant	rs72994141
Chromosome Location	chr6:142878626-142878627
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142873824..142875565-chr6:142876278..142879250,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10484589	0.89[EUR][1000 genomes]
rs11968407	0.89[EUR][1000 genomes]
rs12663303	0.89[EUR][1000 genomes]
rs17071903	0.89[EUR][1000 genomes]
rs17071909	0.89[EUR][1000 genomes]
rs1876844	0.89[EUR][1000 genomes]
rs2136518	0.89[EUR][1000 genomes]
rs2136519	0.89[EUR][1000 genomes]
rs2175164	0.89[EUR][1000 genomes]
rs55671842	0.89[EUR][1000 genomes]
rs55747254	0.89[EUR][1000 genomes]
rs55749277	0.89[EUR][1000 genomes]
rs55787572	0.89[EUR][1000 genomes]
rs56017506	0.89[EUR][1000 genomes]
rs56019737	0.89[EUR][1000 genomes]
rs56043044	0.89[EUR][1000 genomes]
rs56049518	0.89[EUR][1000 genomes]
rs56055844	0.89[EUR][1000 genomes]
rs56082312	0.89[EUR][1000 genomes]
rs56135811	0.89[EUR][1000 genomes]
rs56196468	0.89[EUR][1000 genomes]
rs56228013	0.89[EUR][1000 genomes]
rs56267414	0.89[EUR][1000 genomes]
rs56358606	0.89[EUR][1000 genomes]
rs56363136	0.89[EUR][1000 genomes]
rs72994122	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72996359	0.89[EUR][1000 genomes]
rs72996364	0.89[EUR][1000 genomes]
rs72998326	0.89[EUR][1000 genomes]
rs72998327	0.89[EUR][1000 genomes]
rs72998328	0.89[EUR][1000 genomes]
rs72998329	0.89[EUR][1000 genomes]
rs72998335	0.89[EUR][1000 genomes]
rs72998337	0.89[EUR][1000 genomes]
rs72998353	0.89[EUR][1000 genomes]
rs72998356	0.89[EUR][1000 genomes]
rs72998364	0.89[EUR][1000 genomes]
rs72998367	0.89[EUR][1000 genomes]
rs72998369	0.89[EUR][1000 genomes]
rs72998371	0.89[EUR][1000 genomes]
rs72998375	0.89[EUR][1000 genomes]
rs72998382	0.89[EUR][1000 genomes]
rs72998384	0.89[EUR][1000 genomes]
rs72998386	0.89[EUR][1000 genomes]
rs72998388	0.83[EUR][1000 genomes]
rs72998391	0.89[EUR][1000 genomes]
rs72998393	0.89[EUR][1000 genomes]
rs72998399	0.89[EUR][1000 genomes]
rs72998400	0.89[EUR][1000 genomes]
rs72998402	0.89[EUR][1000 genomes]
rs7759477	0.89[EUR][1000 genomes]
rs7772506	0.89[EUR][1000 genomes]
rs9376698	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142873600-142879000	Weak transcription	Fetal Lung	lung
2	chr6:142873600-142888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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