Variant report

Variant	rs9376700
Chromosome Location	chr6:142954209-142954210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10484589	0.85[EUR][1000 genomes]
rs11968407	0.85[EUR][1000 genomes]
rs12663303	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17071903	0.85[EUR][1000 genomes]
rs17071909	0.85[EUR][1000 genomes]
rs1876842	0.91[ASN][1000 genomes]
rs1876844	0.85[EUR][1000 genomes]
rs2136517	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2136518	0.85[EUR][1000 genomes]
rs2136519	0.85[EUR][1000 genomes]
rs2175164	0.85[EUR][1000 genomes]
rs55671842	0.85[EUR][1000 genomes]
rs55747254	0.85[EUR][1000 genomes]
rs55749277	0.85[EUR][1000 genomes]
rs55787572	0.85[EUR][1000 genomes]
rs56017506	0.85[EUR][1000 genomes]
rs56019737	0.85[EUR][1000 genomes]
rs56043044	0.85[EUR][1000 genomes]
rs56049518	0.85[EUR][1000 genomes]
rs56055844	0.85[EUR][1000 genomes]
rs56082312	0.85[EUR][1000 genomes]
rs56135811	0.85[EUR][1000 genomes]
rs56196468	0.85[EUR][1000 genomes]
rs56228013	0.85[EUR][1000 genomes]
rs56267414	0.85[EUR][1000 genomes]
rs56358606	0.85[EUR][1000 genomes]
rs56363136	0.85[EUR][1000 genomes]
rs6914176	0.90[ASN][1000 genomes]
rs6924746	0.91[ASN][1000 genomes]
rs6929406	0.91[ASN][1000 genomes]
rs6936988	0.90[ASN][1000 genomes]
rs72996359	0.85[EUR][1000 genomes]
rs72996364	0.85[EUR][1000 genomes]
rs72998326	0.85[EUR][1000 genomes]
rs72998327	0.85[EUR][1000 genomes]
rs72998328	0.85[EUR][1000 genomes]
rs72998329	0.85[EUR][1000 genomes]
rs72998335	0.85[EUR][1000 genomes]
rs72998337	0.85[EUR][1000 genomes]
rs72998353	0.85[EUR][1000 genomes]
rs72998356	0.85[EUR][1000 genomes]
rs72998364	0.85[EUR][1000 genomes]
rs72998367	0.85[EUR][1000 genomes]
rs72998369	0.85[EUR][1000 genomes]
rs72998371	0.85[EUR][1000 genomes]
rs72998375	0.85[EUR][1000 genomes]
rs72998382	0.85[EUR][1000 genomes]
rs72998384	0.85[EUR][1000 genomes]
rs72998386	0.85[EUR][1000 genomes]
rs72998388	0.81[EUR][1000 genomes]
rs72998391	0.85[EUR][1000 genomes]
rs72998393	0.85[EUR][1000 genomes]
rs72998399	0.85[EUR][1000 genomes]
rs72998400	0.85[EUR][1000 genomes]
rs72998402	0.85[EUR][1000 genomes]
rs7749392	0.90[ASN][1000 genomes]
rs7753433	0.91[ASN][1000 genomes]
rs7757435	0.90[ASN][1000 genomes]
rs7759477	0.85[EUR][1000 genomes]
rs7760316	0.90[ASN][1000 genomes]
rs7772506	0.85[EUR][1000 genomes]
rs7772807	0.90[ASN][1000 genomes]
rs9373356	0.95[ASN][1000 genomes]
rs9376698	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9376702	0.90[ASN][1000 genomes]
rs9376703	0.90[ASN][1000 genomes]
rs9386004	0.95[ASN][1000 genomes]
rs9386005	0.95[ASN][1000 genomes]
rs9403402	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142946800-142956000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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