Variant report

Variant	rs6936988
Chromosome Location	chr6:142975097-142975098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1876842	0.98[ASN][1000 genomes]
rs2136517	0.91[ASN][1000 genomes]
rs6914176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924746	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6929406	0.98[ASN][1000 genomes]
rs7749392	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753433	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7757435	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373356	0.95[ASN][1000 genomes]
rs9376698	0.84[ASN][1000 genomes]
rs9376700	0.90[ASN][1000 genomes]
rs9376702	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386004	0.95[ASN][1000 genomes]
rs9386005	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9403402	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9403404	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142967200-142975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:142971800-142975600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:142972600-142976000	Enhancers	Fetal Brain Male	brain
4	chr6:142973400-142975400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:142974800-142975200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:142974800-142975200	Flanking Active TSS	Fetal Brain Female	brain
7	chr6:142975000-142975200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:142975000-142975200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:142975000-142975400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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