Variant report

Variant	rs6929406
Chromosome Location	chr6:142965461-142965462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12663303	0.81[ASN][1000 genomes]
rs1876842	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2136517	0.93[ASN][1000 genomes]
rs6914176	0.98[ASN][1000 genomes]
rs6924746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936988	0.98[ASN][1000 genomes]
rs7749392	0.98[ASN][1000 genomes]
rs7753433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757435	0.98[ASN][1000 genomes]
rs7760316	0.98[ASN][1000 genomes]
rs7772807	0.98[ASN][1000 genomes]
rs9373356	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376698	0.86[ASN][1000 genomes]
rs9376700	0.91[ASN][1000 genomes]
rs9376702	0.98[ASN][1000 genomes]
rs9376703	0.98[ASN][1000 genomes]
rs9386004	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386005	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403402	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142959400-142967200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:142960000-142967200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:142963000-142967400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:142963800-142967200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:142965200-142968200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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