Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142962424..142964979-chr6:142965650..142969678,4	K562	blood:
2	chr6:142962424..142964979-chr6:142965650..142968691,3	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12214216	1.00[MEX][hapmap]
rs12663303	0.81[ASN][1000 genomes]
rs2136517	0.93[ASN][1000 genomes]
rs6914176	0.98[ASN][1000 genomes]
rs6924746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929406	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936988	0.98[ASN][1000 genomes]
rs7749392	0.98[ASN][1000 genomes]
rs7753433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757435	0.98[ASN][1000 genomes]
rs7760316	0.98[ASN][1000 genomes]
rs7772807	0.98[ASN][1000 genomes]
rs9373356	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376698	0.86[ASN][1000 genomes]
rs9376700	0.91[ASN][1000 genomes]
rs9376702	0.98[ASN][1000 genomes]
rs9376703	0.98[ASN][1000 genomes]
rs9386004	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403402	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142965200-142968200	Weak transcription	Fetal Lung	lung
2	chr6:142967200-142968800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:142967200-142973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:142967200-142973600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:142967200-142975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:142967400-142967800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:142967400-142968400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:142967400-142968800	Weak transcription	Pancreas	Pancrea
9	chr6:142967400-142971800	Enhancers	HUES48 Cell Line	embryonic stem cell

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