Variant report
| Variant | rs9373356 |
|---|---|
| Chromosome Location | chr6:142959183-142959184 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236366 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12663303 | 0.84[ASN][1000 genomes] |
| rs1876842 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs196354 | 0.92[EUR][1000 genomes] |
| rs2136517 | 0.96[ASN][1000 genomes] |
| rs6570520 | 0.81[EUR][1000 genomes] |
| rs6909340 | 0.81[EUR][1000 genomes] |
| rs6914176 | 0.95[ASN][1000 genomes] |
| rs6924746 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6929406 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6936988 | 0.95[ASN][1000 genomes] |
| rs7749392 | 0.95[ASN][1000 genomes] |
| rs7753433 | 0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7757435 | 0.95[ASN][1000 genomes] |
| rs7760316 | 0.95[ASN][1000 genomes] |
| rs7772807 | 0.95[ASN][1000 genomes] |
| rs9376698 | 0.89[ASN][1000 genomes] |
| rs9376700 | 0.95[ASN][1000 genomes] |
| rs9376702 | 0.95[ASN][1000 genomes] |
| rs9376703 | 0.95[ASN][1000 genomes] |
| rs9386004 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9386005 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9403402 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv830827 | chr6:142840734-143015005 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142958800-142959200 | Enhancers | Fetal Lung | lung |
