Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP2-5	chr6:142958850-142959026	XLOC_005862
2	lnc-HIVEP2-5	chr6:142958850-142958973	XLOC_005862

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12663303	0.84[ASN][1000 genomes]
rs1876842	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs196354	0.92[EUR][1000 genomes]
rs2136517	0.96[ASN][1000 genomes]
rs6570520	0.81[EUR][1000 genomes]
rs6909340	0.81[EUR][1000 genomes]
rs6914176	0.95[ASN][1000 genomes]
rs6924746	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929406	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6936988	0.95[ASN][1000 genomes]
rs7749392	0.95[ASN][1000 genomes]
rs7753433	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7757435	0.95[ASN][1000 genomes]
rs7760316	0.95[ASN][1000 genomes]
rs7772807	0.95[ASN][1000 genomes]
rs9373356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376698	0.89[ASN][1000 genomes]
rs9376700	0.95[ASN][1000 genomes]
rs9376702	0.95[ASN][1000 genomes]
rs9376703	0.95[ASN][1000 genomes]
rs9386005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142958800-142959000	Enhancers	NH-A	brain
2	chr6:142958800-142959200	Enhancers	Fetal Lung	lung

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