Variant report

Variant	rs7757435
Chromosome Location	chr6:142969334-142969335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142962424..142964979-chr6:142965650..142969678,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1876842	0.98[ASN][1000 genomes]
rs2136517	0.91[ASN][1000 genomes]
rs6914176	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924746	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6929406	0.98[ASN][1000 genomes]
rs6936988	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749392	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753433	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7760316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373356	0.95[ASN][1000 genomes]
rs9376698	0.84[ASN][1000 genomes]
rs9376700	0.90[ASN][1000 genomes]
rs9376702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386004	0.95[ASN][1000 genomes]
rs9386005	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9403402	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9403404	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142967200-142973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:142967200-142973600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:142967200-142975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:142967400-142971800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:142967600-142971200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:142967800-142969600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:142968000-142972800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:142968200-142970000	Enhancers	Fetal Lung	lung
9	chr6:142968400-142969400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:142968400-142973200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:142968600-142969400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:142968600-142970000	Enhancers	HepG2	liver
13	chr6:142968800-142969400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:142968800-142969400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:142968800-142969400	Enhancers	Liver	Liver
16	chr6:142968800-142969600	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:142969000-142969600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr6:142969000-142969800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:142969000-142969800	Enhancers	Primary T cells from cord blood	blood
20	chr6:142969000-142969800	Enhancers	Fetal Intestine Large	intestine
21	chr6:142969200-142969400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:142969200-142969600	Active TSS	Fetal Brain Male	brain
23	chr6:142969200-142970000	Weak transcription	Pancreas	Pancrea

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