Variant report

Variant	rs558902406
Chromosome Location	chr11:86758626-86758627
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv3356021	chr11:86757854-86761352	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86749600-86766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:86750000-86765800	Weak transcription	Placenta	Placenta
3	chr11:86750400-86760600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:86750600-86759800	Weak transcription	Fetal Thymus	thymus
5	chr11:86750600-86760600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:86750800-86759800	Weak transcription	HSMMtube	muscle
7	chr11:86750800-86760000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:86750800-86760200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:86750800-86780600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:86750800-86782000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:86750800-86787400	Weak transcription	A549	lung
12	chr11:86751000-86760000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:86751000-86786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:86751000-86787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:86751200-86762600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:86751200-86785600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:86751400-86759800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:86751400-86767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:86751400-86786400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:86751600-86787000	Weak transcription	Aorta	Aorta
21	chr11:86752000-86768800	Weak transcription	Ovary	ovary
22	chr11:86752000-86768800	Weak transcription	Psoas Muscle	Psoas
23	chr11:86752200-86759800	Weak transcription	Fetal Brain Male	brain
24	chr11:86752200-86768800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:86752400-86762400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:86753400-86760200	Weak transcription	Brain Anterior Caudate	brain
27	chr11:86754800-86759600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:86755200-86758800	Weak transcription	Brain Substantia Nigra	brain
29	chr11:86755200-86779000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:86755400-86780200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:86755400-86780400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:86755600-86768600	Weak transcription	Liver	Liver
33	chr11:86755800-86770200	Weak transcription	Fetal Stomach	stomach
34	chr11:86756400-86782800	Weak transcription	Fetal Intestine Small	intestine
35	chr11:86756800-86768400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:86756800-86772400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:86758000-86759200	Weak transcription	Fetal Intestine Large	intestine
38	chr11:86758200-86759400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:86758200-86759600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:86758200-86768200	Weak transcription	HepG2	liver
41	chr11:86758200-86768800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:86758200-86778600	Weak transcription	K562	blood
43	chr11:86758200-86780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:86758200-86780400	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:86758200-86783200	Weak transcription	Primary T cells from cord blood	blood
46	chr11:86758200-86786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:86758400-86760000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:86758400-86768200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:86758400-86772600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:86758400-86776000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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