Variant report

Variant	rs55892914
Chromosome Location	chr5:112808729-112808730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55668675	1.00[AMR][1000 genomes]
rs55834943	1.00[AMR][1000 genomes]
rs59926560	1.00[AMR][1000 genomes]
rs73236450	1.00[AMR][1000 genomes]
rs73236472	1.00[AMR][1000 genomes]
rs73236475	1.00[AMR][1000 genomes]
rs73241741	1.00[AMR][1000 genomes]
rs73252716	1.00[AMR][1000 genomes]
rs73252719	1.00[AMR][1000 genomes]
rs73779023	1.00[AMR][1000 genomes]
rs73779058	1.00[AMR][1000 genomes]
rs73781526	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112786200-112810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112794800-112810000	Weak transcription	NHEK	skin
3	chr5:112807800-112821600	Weak transcription	HMEC	breast
4	chr5:112808000-112808800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:112808000-112810000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:112808200-112809800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:112808200-112809800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:112808200-112810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:112808200-112810200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links