Variant report

Variant	rs73236450
Chromosome Location	chr5:112743454-112743455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55668675	1.00[AMR][1000 genomes]
rs55834943	1.00[AMR][1000 genomes]
rs55892914	1.00[AMR][1000 genomes]
rs56096608	1.00[AMR][1000 genomes]
rs57288647	1.00[AMR][1000 genomes]
rs59926560	1.00[AMR][1000 genomes]
rs6594694	1.00[AMR][1000 genomes]
rs73236472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73236475	1.00[AMR][1000 genomes]
rs73241741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252716	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252719	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779058	1.00[AMR][1000 genomes]
rs73781526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112724400-112751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112741400-112746400	Weak transcription	Pancreas	Pancrea
3	chr5:112742200-112743800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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