Variant report

Variant	rs55894804
Chromosome Location	chr19:39509372-39509373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10426382	0.83[EUR][1000 genomes]
rs12151095	0.80[EUR][1000 genomes]
rs12151263	0.87[EUR][1000 genomes]
rs12151266	0.87[EUR][1000 genomes]
rs12151268	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12151272	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55772809	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55854060	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55873651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55919402	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55966336	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56063522	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56405021	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7248416	0.87[EUR][1000 genomes]
rs7248895	0.87[EUR][1000 genomes]
rs7255339	0.87[EUR][1000 genomes]
rs7258997	0.87[EUR][1000 genomes]
rs7259800	0.87[EUR][1000 genomes]
rs8102539	0.87[EUR][1000 genomes]
rs8107766	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8107781	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs55894804	FBXO27	cis	Esophagus Mucosa	GTEx
rs55894804	CTB-189B5.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39481000-39516000	Weak transcription	Brain Angular Gyrus	brain
2	chr19:39487200-39518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr19:39496600-39515800	Weak transcription	Ovary	ovary
4	chr19:39498400-39516600	Weak transcription	A549	lung
5	chr19:39499400-39516600	Weak transcription	Brain Anterior Caudate	brain
6	chr19:39499800-39516800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr19:39500000-39515600	Weak transcription	Brain Substantia Nigra	brain
8	chr19:39501600-39514800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:39501800-39515800	Weak transcription	Adipose Nuclei	Adipose
10	chr19:39502000-39515400	Weak transcription	Fetal Intestine Small	intestine
11	chr19:39502200-39515600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr19:39502400-39518000	Weak transcription	Aorta	Aorta
13	chr19:39503000-39515400	Weak transcription	Brain Hippocampus Middle	brain
14	chr19:39503600-39520200	Weak transcription	Liver	Liver
15	chr19:39504800-39515800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr19:39505200-39514800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr19:39505200-39515600	Weak transcription	Esophagus	oesophagus
18	chr19:39505400-39514800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr19:39506800-39515600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr19:39506800-39517200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:39507200-39517600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr19:39507400-39515600	Weak transcription	Fetal Stomach	stomach

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