Variant report

Variant	rs558965260
Chromosome Location	chr9:100835490-100835491
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:100835397-100835530	MCF-7	breast:	n/a	n/a
2	MYC	chr9:100835359-100835521	MCF-7	breast:	n/a	n/a
3	POLR2A	chr9:100835265-100835491	MCF-7	breast:	n/a	n/a
4	POLR2A	chr9:100835401-100835491	MCF-7	breast:	n/a	n/a
5	MAX	chr9:100834912-100835623	MCF-7	breast:	n/a	n/a
6	POLR2A	chr9:100835041-100835505	HepG2	liver:	n/a	n/a
7	POLR2A	chr9:100835269-100835491	HepG2	liver:	n/a	n/a
8	ZNF384	chr9:100835345-100835653	K562	blood:	n/a	n/a
9	POLR2A	chr9:100835283-100835498	K562	blood:	n/a	n/a
10	NR2F2	chr9:100834884-100835623	MCF-7	breast:	n/a	n/a
11	ELF1	chr9:100834871-100835513	MCF-7	breast:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100822595..100824589-chr9:100834188..100836915,2	MCF-7	breast:
2	chr9:100745732..100748566-chr9:100835046..100837989,2	MCF-7	breast:
3	chr9:100833115..100836817-chr9:100878685..100885112,5	MCF-7	breast:
4	chr9:100833054..100835913-chr9:100950027..100952929,2	MCF-7	breast:
5	chr9:100835251..100838541-chr9:100953348..100956508,6	MCF-7	breast:
6	chr9:100744956..100747904-chr9:100835369..100837055,2	K562	blood:
7	chr9:100828471..100830288-chr9:100834435..100836026,2	MCF-7	breast:
8	chr9:100832336..100835863-chr9:100838081..100840239,3	K562	blood:
9	chr9:100744716..100748585-chr9:100832900..100838437,10	MCF-7	breast:
10	chr9:100833852..100836754-chr9:100837101..100838637,2	MCF-7	breast:
11	chr9:100817775..100822653-chr9:100832609..100840095,16	MCF-7	breast:
12	chr9:100683356..100686345-chr9:100832359..100837233,6	MCF-7	breast:
13	chr9:100817802..100822153-chr9:100831375..100837110,8	MCF-7	breast:
14	chr9:100829515..100832291-chr9:100834643..100836675,3	K562	blood:
15	chr9:100744956..100747210-chr9:100835059..100837055,2	K562	blood:
16	chr9:100829196..100831340-chr9:100834533..100836675,2	K562	blood:
17	chr19:55917273..55919241-chr9:100834526..100836640,2	MCF-7	breast:

No data

Variant related genes	Relation type
NANS	TF binding region
ENSG00000136932	Chromatin interaction
ENSG00000106789	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
5	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
6	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
8	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
9	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
11	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
12	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:100821000-100836400	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:100821200-100836400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:100821200-100836600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
17	chr9:100822400-100836400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:100822400-100836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:100823600-100836400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:100823800-100842000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:100824600-100836600	Weak transcription	Psoas Muscle	Psoas
22	chr9:100824600-100840000	Weak transcription	Ovary	ovary
23	chr9:100824800-100836400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:100824800-100840000	Weak transcription	Right Ventricle	heart
25	chr9:100824800-100843200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:100825000-100836400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr9:100827200-100841200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr9:100827400-100836400	Weak transcription	Primary B cells from cord blood	blood
29	chr9:100827400-100836400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr9:100827400-100836600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:100827400-100836600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:100827400-100836600	Weak transcription	Aorta	Aorta
33	chr9:100827400-100836600	Weak transcription	NHLF	lung
34	chr9:100827400-100838400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr9:100827600-100836400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr9:100827600-100836400	Weak transcription	Dnd41	blood
37	chr9:100827600-100836600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:100827600-100838200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr9:100828400-100836600	Weak transcription	Brain Anterior Caudate	brain
40	chr9:100828600-100836400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr9:100828600-100836400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr9:100828600-100836400	Weak transcription	Fetal Thymus	thymus
43	chr9:100828600-100836400	Weak transcription	Left Ventricle	heart
44	chr9:100828600-100836600	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:100828600-100836600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:100828600-100843200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:100828800-100836200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr9:100828800-100836400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:100828800-100836400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:100828800-100836400	Weak transcription	Adipose Nuclei	Adipose

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