Variant report

Variant	rs55897764
Chromosome Location	chr6:164051876-164051877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164005924..164008008-chr6:164050205..164053117,2	MCF-7	breast:
2	chr6:164046203..164050114-chr6:164051224..164053273,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13211174	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1407657	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1983789	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34108663	0.87[ASN][1000 genomes]
rs34194488	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35352116	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6455909	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902418	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6906484	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6910433	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6913583	0.92[ASN][1000 genomes]
rs6926766	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927669	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933936	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6941613	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6942363	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7755325	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767492	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9456873	0.96[ASN][1000 genomes]
rs9458865	0.96[ASN][1000 genomes]
rs9458868	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164048000-164061600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164050400-164055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:164051600-164052000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
4	chr6:164051600-164052200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:164051600-164052200	Enhancers	Fetal Heart	heart
6	chr6:164051600-164052200	Active TSS	Right Ventricle	heart
7	chr6:164051600-164052400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
8	chr6:164051600-164054200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:164051800-164052000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:164051800-164052000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
11	chr6:164051800-164052000	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr6:164051800-164052400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links