Variant report

Variant	rs558999022
Chromosome Location	chr7:6387367-6387368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6046534..6048837-chr7:6387102..6390061,2	MCF-7	breast:
2	chr7:6377795..6380161-chr7:6386976..6388780,2	MCF-7	breast:
3	chr7:6097568..6100190-chr7:6387069..6389785,3	MCF-7	breast:
4	chr7:6387247..6388755-chr7:6413232..6415374,2	MCF-7	breast:
5	chr7:6386514..6388780-chr7:6439968..6442713,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122512	Chromatin interaction
ENSG00000136238	Chromatin interaction
ENSG00000178397	Chromatin interaction
ENSG00000086232	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv482829	chr7:6231809-6407606	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
12	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1025381	chr7:6356704-6409818	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv538716	chr7:6365534-6400845	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	esv3375044	chr7:6387252-6389800	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6358200-6387600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:6358200-6387600	Weak transcription	HSMM	muscle
3	chr7:6358200-6387600	Weak transcription	NH-A	brain
4	chr7:6362800-6387800	Weak transcription	Fetal Lung	lung
5	chr7:6363000-6387600	Weak transcription	NHEK	skin
6	chr7:6368400-6387800	Weak transcription	Colonic Mucosa	Colon
7	chr7:6368800-6387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:6370000-6387800	Weak transcription	Brain Substantia Nigra	brain
9	chr7:6370200-6387600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:6370200-6387600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:6370200-6387800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:6370400-6387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:6370400-6387600	Weak transcription	Osteobl	bone
14	chr7:6370600-6387600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:6370600-6387600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:6370600-6387600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:6370600-6387600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:6370600-6387800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:6370800-6387400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:6370800-6387600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:6370800-6387600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:6370800-6387800	Weak transcription	Liver	Liver
23	chr7:6370800-6387800	Weak transcription	HSMMtube	muscle
24	chr7:6370800-6387800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr7:6371000-6387800	Weak transcription	Adipose Nuclei	Adipose
26	chr7:6372000-6387600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:6372000-6387600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:6373200-6387800	Weak transcription	NHDF-Ad	bronchial
29	chr7:6378800-6387600	Weak transcription	A549	lung
30	chr7:6378800-6387800	Weak transcription	Ovary	ovary
31	chr7:6378800-6387800	Weak transcription	GM12878-XiMat	blood
32	chr7:6379000-6387600	Weak transcription	Placenta	Placenta
33	chr7:6379000-6387800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:6379000-6387800	Weak transcription	Psoas Muscle	Psoas
35	chr7:6379600-6387600	Weak transcription	Right Atrium	heart
36	chr7:6380200-6387400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:6381200-6387600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:6382200-6387600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:6382800-6387800	Weak transcription	NHLF	lung
40	chr7:6383800-6387800	Weak transcription	Fetal Kidney	kidney
41	chr7:6384000-6387600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:6384000-6387800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr7:6384200-6387400	Weak transcription	Primary T cells from cord blood	blood
44	chr7:6384200-6387400	Strong transcription	Fetal Stomach	stomach
45	chr7:6384200-6387600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr7:6384200-6387800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr7:6385200-6387600	Weak transcription	Primary B cells from cord blood	blood
48	chr7:6385400-6387800	Weak transcription	K562	blood
49	chr7:6385600-6387800	Weak transcription	Brain Anterior Caudate	brain
50	chr7:6385800-6387600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links