Variant report

Variant	rs559023178
Chromosome Location	chr7:25903018-25903019
allele	-/CT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25900891..25903409-chr7:25932154..25934177,2	K562	blood:
2	chr7:25902422..25904176-chr7:25907218..25908860,2	K562	blood:
3	chr7:25900989..25903469-chr7:26394737..26397654,2	K562	blood:
4	chr7:25901881..25903574-chr7:26239063..26240949,2	MCF-7	breast:
5	chr7:25901871..25903514-chr7:25989852..25991943,2	K562	blood:
6	chr7:25901385..25904121-chr7:25989908..25991928,2	MCF-7	breast:
7	chr7:25901348..25903877-chr7:25904726..25907059,2	K562	blood:
8	chr7:25902131..25903827-chr7:25913868..25916119,2	K562	blood:
9	chr7:25901765..25903846-chr7:25928862..25931823,2	K562	blood:
10	chr7:25900544..25903827-chr7:25911333..25915801,5	K562	blood:
11	chr7:25900551..25904078-chr7:26238740..26241514,6	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25900000-25903800	Active TSS	K562	blood
2	chr7:25902600-25903800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr7:25902600-25904000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr7:25902600-25904000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr7:25902600-25904200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr7:25902600-25904200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:25902800-25903200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:25902800-25903400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr7:25902800-25903400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:25902800-25903600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr7:25903000-25903200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:25903000-25903200	Enhancers	NHEK	skin
13	chr7:25903000-25903400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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