Variant report

Variant	rs55902618
Chromosome Location	chr2:10408453-10408454
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10393161..10396056-chr2:10408396..10410670,2	K562	blood:
2	chr2:10394157..10396963-chr2:10408123..10409745,2	MCF-7	breast:
3	chr2:10407684..10409187-chr2:10409189..10411668,2	K562	blood:
4	chr2:10407016..10409073-chr2:10423584..10425357,2	K562	blood:
5	chr2:10392345..10395188-chr2:10407318..10409008,2	K562	blood:
6	chr2:10406981..10409160-chr2:10410945..10413654,2	MCF-7	breast:
7	chr2:10408398..10410082-chr2:10581938..10584140,2	K562	blood:
8	chr2:10402938..10406350-chr2:10406661..10410178,4	K562	blood:
9	chr2:10275519..10277436-chr2:10408432..10410415,2	K562	blood:
10	chr2:10408428..10415108-chr2:10440417..10445284,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000115756	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11886933	1.00[ASN][1000 genomes]
rs4669559	1.00[ASN][1000 genomes]
rs56277911	1.00[ASN][1000 genomes]
rs6744258	1.00[ASN][1000 genomes]
rs72542775	1.00[ASN][1000 genomes]
rs72542787	1.00[ASN][1000 genomes]
rs72771623	1.00[ASN][1000 genomes]
rs72771625	1.00[ASN][1000 genomes]
rs7586930	1.00[ASN][1000 genomes]
rs7601478	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv873640	chr2:10385097-10422342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2762357	chr2:10401309-10426323	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10401600-10409600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:10405200-10410600	Weak transcription	Spleen	Spleen
3	chr2:10405600-10408800	Enhancers	Fetal Muscle Leg	muscle
4	chr2:10405600-10411000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:10406000-10408600	Enhancers	Fetal Muscle Trunk	muscle
6	chr2:10406400-10408800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr2:10406400-10410400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:10406400-10410600	Weak transcription	Hela-S3	cervix
9	chr2:10406400-10411800	Weak transcription	Aorta	Aorta
10	chr2:10406600-10410400	Weak transcription	A549	lung
11	chr2:10407000-10410600	Weak transcription	Osteobl	bone
12	chr2:10407000-10410800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:10407200-10409000	Enhancers	Fetal Intestine Large	intestine
14	chr2:10407200-10412600	Enhancers	Fetal Intestine Small	intestine
15	chr2:10407400-10408600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:10407400-10408800	Enhancers	Duodenum Mucosa	Duodenum
17	chr2:10407600-10408600	Enhancers	Pancreas	Pancrea
18	chr2:10408000-10410000	Weak transcription	Colonic Mucosa	Colon
19	chr2:10408200-10409800	Weak transcription	Gastric	stomach
20	chr2:10408200-10409800	Weak transcription	Stomach Mucosa	stomach
21	chr2:10408200-10410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:10408200-10410400	Weak transcription	HSMMtube	muscle
23	chr2:10408200-10410800	Weak transcription	Right Ventricle	heart
24	chr2:10408200-10410800	Weak transcription	HSMM	muscle
25	chr2:10408200-10411600	Weak transcription	Right Atrium	heart
26	chr2:10408400-10408600	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr2:10408400-10408600	Flanking Bivalent TSS/Enh	HepG2	liver

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