Variant report

Variant	rs6744258
Chromosome Location	chr2:10365948-10365949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10357831..10359607-chr2:10365467..10367215,2	K562	blood:
2	chr2:10365290..10368319-chr2:10370625..10373445,3	MCF-7	breast:
3	chr2:10364084..10367061-chr2:10372581..10374808,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11886933	1.00[ASN][1000 genomes]
rs1861234	0.81[EUR][1000 genomes]
rs35927125	1.00[ASN][1000 genomes]
rs4444493	1.00[ASN][1000 genomes]
rs4669555	0.82[EUR][1000 genomes]
rs4669557	0.82[EUR][1000 genomes]
rs4669559	1.00[ASN][1000 genomes]
rs55902618	1.00[ASN][1000 genomes]
rs56277911	1.00[ASN][1000 genomes]
rs57031421	1.00[ASN][1000 genomes]
rs6716517	1.00[ASN][1000 genomes]
rs72542775	1.00[ASN][1000 genomes]
rs72542787	1.00[ASN][1000 genomes]
rs72771623	1.00[ASN][1000 genomes]
rs72771625	1.00[ASN][1000 genomes]
rs72784502	1.00[ASN][1000 genomes]
rs72786603	1.00[ASN][1000 genomes]
rs7586930	1.00[ASN][1000 genomes]
rs7591484	1.00[ASN][1000 genomes]
rs7601478	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv34981	chr2:10341468-10384302	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv35171	chr2:10341468-10384302	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2756904	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv2759024	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv873637	chr2:10349858-10381434	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv962058	chr2:10350771-10376962	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv873638	chr2:10351852-10381434	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10350400-10375200	Weak transcription	Right Atrium	heart
2	chr2:10357800-10368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:10360600-10367600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:10362000-10369600	Weak transcription	Right Ventricle	heart
5	chr2:10362800-10368600	Weak transcription	Left Ventricle	heart
6	chr2:10362800-10375000	Weak transcription	Brain Germinal Matrix	brain
7	chr2:10363800-10370400	Weak transcription	Spleen	Spleen
8	chr2:10364200-10369200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:10364600-10370000	Enhancers	Fetal Intestine Small	intestine
10	chr2:10364600-10371000	Enhancers	Fetal Intestine Large	intestine
11	chr2:10364800-10366800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr2:10364800-10369200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:10365000-10366400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:10365000-10369800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr2:10365000-10370200	Enhancers	Duodenum Mucosa	Duodenum
16	chr2:10365200-10366400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:10365400-10366400	Enhancers	Fetal Thymus	thymus
18	chr2:10365400-10367800	Enhancers	Fetal Muscle Leg	muscle
19	chr2:10365400-10370800	Enhancers	Stomach Mucosa	stomach
20	chr2:10365600-10366000	Enhancers	Fetal Kidney	kidney
21	chr2:10365600-10366400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:10365600-10366800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:10365600-10366800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:10365600-10367800	Enhancers	Colonic Mucosa	Colon
25	chr2:10365600-10369800	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr2:10365800-10366000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr2:10365800-10367000	Flanking Bivalent TSS/Enh	HepG2	liver

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