Variant report

Variant	rs55903345
Chromosome Location	chr3:196044669-196044670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr3:196044481-196045524	T-47D	breast:	n/a	chr3:196044511-196044524
2	MAX	chr3:196044333-196045451	A549	lung:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
3	MAZ	chr3:196044333-196045428	IMR90	lung:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
4	E2F6	chr3:196044374-196045537	K562	blood:	n/a	chr3:196045195-196045206 chr3:196044911-196044926 chr3:196045176-196045185
5	MAX	chr3:196044328-196045562	ECC-1	luminal epithelium:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
6	TBL1XR1	chr3:196044548-196045386	K562	blood:	n/a	n/a
7	MAX	chr3:196044346-196045543	ECC-1	luminal epithelium:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
8	POLR2A	chr3:196044267-196045595	Hela-S3	cervix:	n/a	n/a
9	MTA3	chr3:196044294-196045521	GM12878	blood:	n/a	n/a
10	POLR2A	chr3:196044417-196045494	GM18526	blood:	n/a	n/a
11	TAF1	chr3:196044442-196045516	MCF-7	breast:	n/a	n/a
12	POLR2A	chr3:196044335-196045515	ECC-1	luminal epithelium:	n/a	n/a
13	MAX	chr3:196044597-196045361	A549	lung:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
14	ZBTB7A	chr3:196044344-196045370	ECC-1	luminal epithelium:	n/a	n/a
15	E2F4	chr3:196044501-196045407	K562	blood:	n/a	chr3:196044911-196044926 chr3:196045176-196045185 chr3:196045195-196045206
16	MYC	chr3:196044593-196045334	MCF10A-Er-Src	breast:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
17	TEAD4	chr3:196044335-196045448	ECC-1	luminal epithelium:	n/a	n/a
18	EP300	chr3:196044614-196044703	GM12878	blood:	n/a	n/a
19	RUNX3	chr3:196044322-196045516	GM12878	blood:	n/a	chr3:196045065-196045080
20	POLR2A	chr3:196044444-196045545	GM12891	blood:	n/a	n/a
21	POLR2A	chr3:196044329-196045655	PFSK-1	brain:	n/a	n/a
22	POLR2A	chr3:196044377-196045436	HL-60	blood:	n/a	n/a
23	MAX	chr3:196044262-196045579	A549	lung:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
24	POLR2A	chr3:196044459-196045546	HL-60	blood:	n/a	n/a
25	RFX5	chr3:196044646-196045408	Hela-S3	cervix:	n/a	chr3:196045100-196045115 chr3:196045100-196045115 chr3:196045100-196045115
26	SIN3AK20	chr3:196044379-196045431	SK-N-SH	brain:	n/a	n/a
27	POLR2A	chr3:196044343-196045608	SK-N-MC	brain:	n/a	n/a
28	POLR2A	chr3:196044385-196045579	MCF-7	breast:	n/a	n/a
29	STAT5A	chr3:196044306-196045513	GM12878	blood:	n/a	chr3:196044590-196044598
30	TCF12	chr3:196044648-196045403	GM12878	blood:	n/a	n/a
31	GABPA	chr3:196044406-196045458	MCF-7	breast:	n/a	chr3:196045168-196045177 chr3:196045175-196045189 chr3:196045172-196045186 chr3:196045175-196045186 chr3:196045177-196045186
32	HA-E2F1	chr3:196044418-196045444	Hela-S3	cervix:	n/a	chr3:196045194-196045205 chr3:196045176-196045185
33	POLR2A	chr3:196044412-196045377	A549	lung:	n/a	n/a
34	JUND	chr3:196044505-196045445	K562	blood:	n/a	n/a
35	POLR2A	chr3:196044358-196045486	K562	blood:	n/a	n/a
36	IRF1	chr3:196044532-196045342	K562	blood:	n/a	chr3:196044848-196044862
37	MAZ	chr3:196044532-196045309	HepG2	liver:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
38	TAF1	chr3:196044400-196045447	HepG2	liver:	n/a	n/a
39	MYC	chr3:196044502-196045470	K562	blood:	n/a	chr3:196045123-196045133 chr3:196045105-196045114
40	POLR2A	chr3:196044426-196045538	PBDE	blood:	n/a	n/a
41	POLR2A	chr3:196044271-196045657	U87	brain:	n/a	n/a
42	UBTF	chr3:196044509-196045421	K562	blood:	n/a	n/a
43	HEY1	chr3:196043809-196045488	K562	blood:	n/a	chr3:196044729-196044744 chr3:196045118-196045133 chr3:196045141-196045156
44	POLR2A	chr3:196044389-196045523	Raji	blood:	n/a	n/a
45	CREB1	chr3:196044341-196045535	HepG2	liver:	n/a	n/a
46	E2F1	chr3:196044454-196045468	Hela-S3	cervix:	n/a	chr3:196044911-196044926 chr3:196045194-196045205 chr3:196045176-196045185
47	TFAP2C	chr3:196044487-196045596	Hela-S3	cervix:	n/a	chr3:196045234-196045249 chr3:196045284-196045299 chr3:196044713-196044728
48	JUN	chr3:196044352-196045682	K562	blood:	n/a	n/a
49	POLR2A	chr3:196044359-196045426	HUVEC	blood vessel:	n/a	n/a
50	YY1	chr3:196044473-196044734	GM12892	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:196044632-196044682	AG09309	skin:	n/a
2	chr3:196044632-196044682	NT2-D1	testis:	n/a
3	chr3:196044632-196044682	Hepatocyte	liver:	n/a
4	chr3:196044632-196044682	HL-60	blood:	n/a
5	chr3:196044632-196044682	H1-hESC	embryonic stem cell:	embryo
6	chr3:196044632-196044682	HCT-116	colon:	n/a
7	chr3:196044632-196044682	NH-A	brain:	n/a
8	chr3:196044632-196044682	AG04449	skin:	fetal
9	chr3:196044632-196044682	HPAEpiC	pulmonary alveolar:	n/a
10	chr3:196044632-196044682	SK-N-MC	brain:	n/a
11	chr3:196044632-196044682	IMR90	lung:	fetal
12	chr3:196044632-196044682	LNCaP	prostate:	n/a
13	chr3:196044632-196044682	HEK293	kidney:	embryo
14	chr3:196044632-196044682	T-47D	breast:	n/a
15	chr3:196044632-196044682	HRE	kidney:	n/a
16	chr3:196044632-196044682	RPTEC	kidney:	n/a
17	chr3:196044632-196044682	GM12892	blood:	n/a
18	chr3:196044632-196044682	HAEpiC	amniotic membrane:	n/a
19	chr3:196044632-196044682	ProgFib	skin:	n/a
20	chr3:196044632-196044682	HRPEpiC	eye:	n/a
21	chr3:196044632-196044682	PANC-1	pancreas:	n/a
22	chr3:196044632-196044682	NHDF-neo	bronchial:	n/a
23	chr3:196044632-196044682	SK-N-SH_RA	brain:	n/a
24	chr3:196044632-196044682	AG10803	skin:	n/a
25	chr3:196044632-196044682	HMEC	breast:	n/a
26	chr3:196044632-196044682	CMK	blood:	n/a
27	chr3:196044632-196044682	K562	blood:	n/a
28	chr3:196044632-196044682	ovcar-3	ovarian:	n/a
29	chr3:196044632-196044682	HepG2	liver:	n/a
30	chr3:196044632-196044682	HCF	heart:	n/a
31	chr3:196044632-196044682	AG09319	gingival:	n/a
32	chr3:196044632-196044682	AG04450	lung:	fetal
33	chr3:196044632-196044682	SKMC	muscle:	n/a
34	chr3:196044632-196044682	SAEC	small airway:	n/a
35	chr3:196044632-196044682	BJ	skin:	n/a
36	chr3:196044632-196044682	MCF10A-Er-Src	breast:	n/a
37	chr3:196044632-196044682	GM06990	blood:	n/a
38	chr3:196044632-196044682	Caco-2	colon:	n/a
39	chr3:196044632-196044682	PFSK-1	brain:	n/a
40	chr3:196044632-196044682	ECC-1	luminal epithelium:	n/a
41	chr3:196044632-196044682	SK-N-SH	brain:	n/a
42	chr3:196044632-196044682	Jurkat	blood:	n/a
43	chr3:196044632-196044682	GM12891	blood:	n/a
44	chr3:196044632-196044682	HEEpiC	esophagus:	n/a
45	chr3:196044632-196044682	GM19239	blood:	n/a
46	chr3:196044632-196044682	HUVEC	blood vessel:	n/a
47	chr3:196044632-196044682	AoSMC	blood vessel:	n/a
48	chr3:196044632-196044682	HRCEpiC	kidney:	n/a
49	chr3:196044632-196044682	HCM	heart:	n/a
50	chr3:196044632-196044682	HIPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:63892453..63892996-chr3:196044627..196045171,2	NB4	blood:
2	chr3:196013567..196017227-chr3:196043342..196045325,4	MCF-7	breast:
3	chr3:196043015..196047197-chr3:196061951..196068288,11	K562	blood:
4	chr3:196043730..196046568-chr3:196064807..196067685,4	MCF-7	breast:
5	chr3:196043128..196045052-chr3:196273376..196275560,2	MCF-7	breast:
6	chr3:196012377..196016502-chr3:196041586..196047553,11	K562	blood:
7	chr3:196022549..196024808-chr3:196044443..196046676,2	K562	blood:
8	chr3:196012669..196015162-chr3:196043820..196046764,2	K562	blood:
9	chr3:196043550..196045099-chr3:196157832..196159641,2	MCF-7	breast:
10	chr3:196043702..196046805-chr3:196047566..196053193,12	MCF-7	breast:
11	chr3:196040934..196046683-chr3:196067954..196076269,13	MCF-7	breast:
12	chr3:196044330..196045109-chr5:44808668..44809542,2	Hela-S3	cervix:
13	chr3:196030106..196032154-chr3:196042449..196045068,2	K562	blood:
14	chr3:196043015..196046706-chr3:196061951..196066451,7	K562	blood:
15	chr3:196013508..196016403-chr3:196043043..196046288,6	MCF-7	breast:

Variant related genes	Relation type
TM4SF19-AS1	TF binding region
TM4SF19-AS1	CpG island
ENSG00000251141	Chromatin interaction
ENSG00000259248	Chromatin interaction
ENSG00000145107	Chromatin interaction
ENSG00000212146	Chromatin interaction
ENSG00000213123	Chromatin interaction
ENSG00000225822	Chromatin interaction
ENSG00000163960	Chromatin interaction
ENSG00000112996	Chromatin interaction
ENSG00000273331	Chromatin interaction
ENSG00000161217	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11914521	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11929532	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12637379	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1357289	0.81[ASN][1000 genomes]
rs2293160	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916424	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916425	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916476	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4916477	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4916479	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55878253	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56240083	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56370923	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60216585	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60336404	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67317524	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67600689	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6762272	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6778879	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73212155	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73212160	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv532213	chr3:195643944-196063636	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	nsv1009811	chr3:195851796-196138071	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
6	nsv461131	chr3:195858887-196072442	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
7	nsv593071	chr3:195858887-196072442	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
8	nsv1009178	chr3:195864466-196081670	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
9	nsv536892	chr3:195864466-196081670	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
10	nsv1003550	chr3:195885340-196159824	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
11	nsv536893	chr3:195885340-196159824	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	nsv1014563	chr3:195934010-196085951	Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv878180	chr3:195946535-196066569	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	nsv878181	chr3:195946535-196072442	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
15	nsv1003194	chr3:195960270-196342423	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
16	nsv536894	chr3:195960270-196342423	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
17	nsv878182	chr3:195974181-196228360	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv1003764	chr3:196028141-196190687	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
19	nsv536895	chr3:196028141-196190687	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
20	nsv4183	chr3:196034067-196079109	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
21	esv3407163	chr3:196042555-196045153	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
22	esv3389071	chr3:196042555-196045453	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs55903345	TM4SF19	cis	Muscle Skeletal	GTEx
rs55903345	TCTEX1D2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196043200-196045800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:196043600-196045600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:196043600-196045600	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr3:196043600-196045600	Active TSS	Primary T killer memory cells from peripheral blood	blood
5	chr3:196043600-196045800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:196043600-196046600	Active TSS	A549	lung
7	chr3:196043800-196044800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:196043800-196045600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr3:196043800-196045600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr3:196043800-196045600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:196043800-196045600	Active TSS	Brain Germinal Matrix	brain
12	chr3:196043800-196045800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:196043800-196045800	Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr3:196043800-196045800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:196043800-196045800	Active TSS	Fetal Brain Female	brain
16	chr3:196043800-196045800	Active TSS	Osteobl	bone
17	chr3:196043800-196046000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:196043800-196046000	Active TSS	HSMM	muscle
19	chr3:196043800-196047000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:196044000-196045200	Active TSS	Fetal Brain Male	brain
21	chr3:196044000-196045600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:196044000-196045600	Active TSS	Fetal Kidney	kidney
23	chr3:196044000-196045600	Active TSS	NHDF-Ad	bronchial
24	chr3:196044000-196045600	Active TSS	NHLF	lung
25	chr3:196044000-196045800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:196044000-196045800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:196044000-196045800	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr3:196044000-196045800	Active TSS	GM12878-XiMat	blood
29	chr3:196044000-196045800	Active TSS	K562	blood
30	chr3:196044000-196046000	Active TSS	Muscle Satellite Cultured Cells	--
31	chr3:196044000-196046000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:196044000-196046200	Active TSS	Hela-S3	cervix
33	chr3:196044200-196044800	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr3:196044200-196045400	Active TSS	Adipose Nuclei	Adipose
35	chr3:196044200-196045400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr3:196044200-196045400	Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr3:196044200-196045600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:196044200-196045600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:196044200-196045600	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr3:196044200-196045600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:196044200-196045600	Active TSS	Brain Anterior Caudate	brain
42	chr3:196044200-196045600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr3:196044200-196045600	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr3:196044200-196045600	Active TSS	Fetal Lung	lung
45	chr3:196044200-196045600	Active TSS	Placenta	Placenta
46	chr3:196044200-196045600	Active TSS	Fetal Thymus	thymus
47	chr3:196044200-196045600	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr3:196044200-196045600	Active TSS	Thymus	Thymus
49	chr3:196044200-196045600	Active TSS	HSMMtube	muscle
50	chr3:196044200-196045600	Active TSS	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links