Variant report

Variant	rs55906122
Chromosome Location	chr1:175000057-175000058
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174999004..175000511-chr1:175003802..175005678,2	MCF-7	breast:
2	chr1:174999715..175000287-chr1:175115510..175116172,2	MCF-7	breast:
3	chr1:174998932..175000552-chr1:175032819..175035419,2	MCF-7	breast:
4	chr1:174991178..174995675-chr1:174996166..175000159,7	K562	blood:
5	chr1:174967869..174969561-chr1:174997515..175001267,3	K562	blood:
6	chr1:174999884..175001558-chr1:175119055..175120862,2	K562	blood:
7	chr1:174998349..175001108-chr1:175001505..175005015,4	K562	blood:
8	chr1:174991600..174995417-chr1:174999655..175003613,4	MCF-7	breast:
9	chr1:174998367..175000199-chr1:175006049..175008885,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61581018	1.00[AMR][1000 genomes]
rs74126879	1.00[AMR][1000 genomes]
rs74126885	1.00[AMR][1000 genomes]
rs74126888	1.00[AMR][1000 genomes]
rs74126893	1.00[AMR][1000 genomes]
rs74126900	1.00[AMR][1000 genomes]
rs74126902	1.00[AMR][1000 genomes]
rs74128531	1.00[AMR][1000 genomes]
rs74128541	1.00[AMR][1000 genomes]
rs74128543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128558	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947512	chr1:174984818-175000909	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174993200-175004800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:174993200-175013800	Weak transcription	Spleen	Spleen
3	chr1:174998200-175001800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:174998800-175003800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:174999000-175004000	Weak transcription	HMEC	breast
6	chr1:174999000-175005000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:174999200-175000400	Weak transcription	Adipose Nuclei	Adipose
8	chr1:174999200-175000400	Weak transcription	Lung	lung
9	chr1:174999200-175001800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:174999400-175002200	Weak transcription	Fetal Brain Male	brain
11	chr1:174999400-175003200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:174999400-175005000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:174999400-175006400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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