Variant report

Variant	rs74126879
Chromosome Location	chr1:174748251-174748252
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55895977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55906122	1.00[AMR][1000 genomes]
rs56304068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58047309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58213639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61581018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128531	1.00[AMR][1000 genomes]
rs74128541	1.00[AMR][1000 genomes]
rs74128543	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv548198	chr1:174731596-174800872	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174742400-174752200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:174745000-174756800	Weak transcription	HSMMtube	muscle
3	chr1:174747000-174768400	Weak transcription	Primary B cells from cord blood	blood
4	chr1:174748000-174748600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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