Variant report

Variant	rs74126878
Chromosome Location	chr1:174740396-174740397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174740122..174741759-chr1:174944218..174946654,2	MCF-7	breast:
2	chr1:174738942..174742917-chr1:174963137..174966746,3	MCF-7	breast:
3	chr1:174735208..174740631-chr1:174966337..174969324,7	MCF-7	breast:
4	chr1:174738094..174740813-chr1:174741842..174744750,2	K562	blood:
5	chr1:174739087..174740946-chr1:174743005..174745287,2	K562	blood:
6	chr1:174735393..174743353-chr1:174964672..174971853,16	K562	blood:
7	chr1:174737447..174741477-chr1:174966880..174970168,5	MCF-7	breast:
8	chr1:174736386..174740944-chr1:174964309..174969947,11	K562	blood:
9	chr1:174566765..174568988-chr1:174739021..174740535,2	K562	blood:
10	chr1:174738784..174740555-chr1:174951842..174953064,10	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55895977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56304068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58047309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58213639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59523675	1.00[AMR][1000 genomes]
rs61581018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv548197	chr1:174731596-174741017	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv548198	chr1:174731596-174800872	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174711800-174745600	Weak transcription	Primary B cells from cord blood	blood
2	chr1:174737600-174741800	Weak transcription	Fetal Intestine Large	intestine
3	chr1:174737600-174744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:174737800-174741800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:174738800-174744400	Enhancers	Liver	Liver
6	chr1:174739600-174740400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:174739800-174740400	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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