Variant report

Variant	rs55906911
Chromosome Location	chr20:22269842-22269843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55972046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59034302	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59545487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60915459	1.00[AMR][1000 genomes]
rs73899961	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899962	1.00[AMR][1000 genomes]
rs73899964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899967	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899994	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73900468	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv962639	chr20:22254826-22283685	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22268800-22270000	Enhancers	Fetal Muscle Leg	muscle
2	chr20:22268800-22270400	Enhancers	HMEC	breast
3	chr20:22268800-22270400	Enhancers	HSMM	muscle
4	chr20:22268800-22271000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:22268800-22271000	Enhancers	NHEK	skin
6	chr20:22268800-22271400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr20:22269000-22270000	Enhancers	HSMMtube	muscle
8	chr20:22269200-22270200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr20:22269600-22270800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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