Variant report

Variant	rs73899965
Chromosome Location	chr20:22251844-22251845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55906911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55972046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59034302	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59545487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60915459	1.00[AMR][1000 genomes]
rs73899961	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899962	1.00[AMR][1000 genomes]
rs73899964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899966	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899967	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899994	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73900468	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv544212	chr20:22233715-22256861	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22251000-22252400	Enhancers	Stomach Smooth Muscle	stomach
2	chr20:22251000-22252600	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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