Variant report

Variant	rs55907307
Chromosome Location	chr3:119526883-119526884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12721597	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16830505	0.90[ASN][1000 genomes]
rs4687884	1.00[ASN][1000 genomes]
rs4687885	1.00[ASN][1000 genomes]
rs4687886	1.00[ASN][1000 genomes]
rs4687887	1.00[ASN][1000 genomes]
rs56155951	1.00[ASN][1000 genomes]
rs59162145	1.00[ASN][1000 genomes]
rs59953121	1.00[ASN][1000 genomes]
rs60822858	1.00[ASN][1000 genomes]
rs61211594	1.00[ASN][1000 genomes]
rs6438545	1.00[ASN][1000 genomes]
rs6773295	1.00[ASN][1000 genomes]
rs6775566	1.00[ASN][1000 genomes]
rs72552100	1.00[ASN][1000 genomes]
rs72554005	1.00[ASN][1000 genomes]
rs72554006	1.00[ASN][1000 genomes]
rs72554009	1.00[ASN][1000 genomes]
rs72554015	1.00[ASN][1000 genomes]
rs73854707	0.82[ASN][1000 genomes]
rs73854708	1.00[ASN][1000 genomes]
rs73854714	1.00[ASN][1000 genomes]
rs73854716	0.82[ASN][1000 genomes]
rs73854719	1.00[AFR][1000 genomes]
rs9828996	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119515400-119527200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:119515400-119528600	Weak transcription	Colonic Mucosa	Colon
3	chr3:119515800-119527400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:119516800-119534600	Weak transcription	HepG2	liver
5	chr3:119525000-119528200	Strong transcription	Fetal Intestine Large	intestine
6	chr3:119525000-119532400	Weak transcription	Small Intestine	intestine
7	chr3:119525200-119528600	Strong transcription	Fetal Intestine Small	intestine
8	chr3:119525200-119529000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:119525800-119528800	Strong transcription	Liver	Liver
10	chr3:119526000-119527800	Strong transcription	Duodenum Mucosa	Duodenum
11	chr3:119526000-119528000	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr3:119526600-119528400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:119526800-119527400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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