Variant report

Variant	rs55909962
Chromosome Location	chr2:56315184-56315185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10174651	0.89[EUR][1000 genomes]
rs10177559	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55721408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55736515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55880086	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56242550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798921	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72798922	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798941	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72798942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72798959	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72798960	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72798966	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72798967	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72798971	0.89[EUR][1000 genomes]
rs72798977	0.89[EUR][1000 genomes]
rs72798978	0.89[EUR][1000 genomes]
rs72798982	0.89[EUR][1000 genomes]
rs72798983	0.89[EUR][1000 genomes]
rs72798984	0.89[EUR][1000 genomes]
rs72798986	0.89[EUR][1000 genomes]
rs72798987	0.89[EUR][1000 genomes]
rs72798989	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72798998	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72799000	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72801113	0.83[EUR][1000 genomes]
rs72801116	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72801123	0.87[AMR][1000 genomes]
rs72801125	0.87[AMR][1000 genomes]
rs72801126	0.87[AMR][1000 genomes]
rs72801136	0.87[AMR][1000 genomes]
rs72801146	0.87[AMR][1000 genomes]
rs72801148	0.87[AMR][1000 genomes]
rs72815915	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv520175	chr2:56228351-56331375	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv874162	chr2:56255832-56480571	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34703	chr2:56272949-56382181	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv874163	chr2:56280428-56357582	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv874164	chr2:56280428-56388746	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv874165	chr2:56280428-56393918	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv9824	chr2:56282176-56392083	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv874166	chr2:56282762-56370879	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv874167	chr2:56284418-56388746	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv457952	chr2:56292883-56388746	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv582031	chr2:56292883-56388746	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56312000-56315400	Weak transcription	HSMM	muscle

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