Variant report

Variant	rs72798922
Chromosome Location	chr2:56269029-56269030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56263078..56265066-chr2:56267815..56270034,2	MCF-7	breast:
2	chr2:56264938..56268189-chr2:56268987..56273621,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10174651	0.86[EUR][1000 genomes]
rs10177559	0.86[EUR][1000 genomes]
rs55721408	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55736515	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55880086	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55909962	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56242550	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798921	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798923	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798924	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798927	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798941	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72798942	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798943	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798945	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72798959	0.86[EUR][1000 genomes]
rs72798960	0.86[EUR][1000 genomes]
rs72798966	0.86[EUR][1000 genomes]
rs72798967	0.86[EUR][1000 genomes]
rs72798971	0.86[EUR][1000 genomes]
rs72798977	0.86[EUR][1000 genomes]
rs72798978	0.86[EUR][1000 genomes]
rs72798982	0.86[EUR][1000 genomes]
rs72798983	0.86[EUR][1000 genomes]
rs72798984	0.86[EUR][1000 genomes]
rs72798986	0.86[EUR][1000 genomes]
rs72798987	0.86[EUR][1000 genomes]
rs72798989	0.86[EUR][1000 genomes]
rs72798998	0.86[EUR][1000 genomes]
rs72799000	0.86[EUR][1000 genomes]
rs72815915	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv520175	chr2:56228351-56331375	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874162	chr2:56255832-56480571	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56267000-56270400	Weak transcription	Pancreas	Pancrea

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