Variant report

Variant	rs55912891
Chromosome Location	chr4:125266434-125266435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1356837	0.91[AMR][1000 genomes]
rs17007865	0.81[ASN][1000 genomes]
rs17007891	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17007895	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17007919	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17007979	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17007993	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17008025	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17008046	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17008080	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085478	0.81[ASN][1000 genomes]
rs35126454	0.81[ASN][1000 genomes]
rs3915059	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55944349	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587688	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs633360	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs635826	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs662007	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs673648	0.88[AMR][1000 genomes]
rs72674760	0.81[ASN][1000 genomes]
rs72676609	0.91[AMR][1000 genomes]
rs72676620	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72676625	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv595380	chr4:125265313-125336932	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125260400-125272200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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