Variant report

Variant	rs587688
Chromosome Location	chr4:125256935-125256936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125255404..125257236-chr4:125632855..125634412,2	MCF-7	breast:
2	chr4:125255585..125257138-chr4:125353670..125355565,2	MCF-7	breast:
3	chr4:125254607..125257122-chr4:125631986..125634791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10518428	0.82[ASN][1000 genomes]
rs11727670	0.82[ASN][1000 genomes]
rs13114340	0.82[ASN][1000 genomes]
rs1356837	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1520324	0.82[ASN][1000 genomes]
rs17007865	0.86[ASN][1000 genomes]
rs17007891	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17007895	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17007919	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17007979	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17007993	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17008025	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17008036	0.83[ASN][1000 genomes]
rs17008046	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17008080	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17759829	0.82[ASN][1000 genomes]
rs2085478	0.86[ASN][1000 genomes]
rs35126454	0.86[ASN][1000 genomes]
rs36053966	0.82[ASN][1000 genomes]
rs3915059	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55912891	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55944349	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs633360	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635826	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs662007	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67108654	0.82[ASN][1000 genomes]
rs673648	0.85[ASN][1000 genomes]
rs67409445	0.82[ASN][1000 genomes]
rs72674757	0.81[ASN][1000 genomes]
rs72674760	0.86[ASN][1000 genomes]
rs72676609	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72676620	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72676625	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125252200-125258800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:125255400-125258400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:125255800-125259000	Weak transcription	Fetal Kidney	kidney
4	chr4:125255800-125259000	Weak transcription	Fetal Lung	lung
5	chr4:125255800-125264400	Weak transcription	NHDF-Ad	bronchial
6	chr4:125256000-125257000	Weak transcription	HUVEC	blood vessel
7	chr4:125256600-125258400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links