Variant report

Variant	rs55913593
Chromosome Location	chr6:140755488-140755489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1414831	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1414832	0.93[EUR][1000 genomes]
rs1414833	0.95[EUR][1000 genomes]
rs1414838	0.83[EUR][1000 genomes]
rs1414839	0.82[EUR][1000 genomes]
rs1832675	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2152617	0.81[EUR][1000 genomes]
rs2328087	0.82[EUR][1000 genomes]
rs56311753	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62429792	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62429830	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62429844	0.94[EUR][1000 genomes]
rs6910926	0.82[EUR][1000 genomes]
rs9403191	0.80[EUR][1000 genomes]
rs967790	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140748000-140758800	Weak transcription	Ovary	ovary
2	chr6:140754200-140756600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr6:140754600-140756600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:140754800-140756600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr6:140755000-140755800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:140755000-140756200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:140755000-140756400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr6:140755200-140757000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:140755400-140756800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
10	chr6:140755400-140757200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:140755400-140757200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:140755400-140759400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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