Variant report

Variant	rs55916507
Chromosome Location	chr15:72180484-72180485
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12101538	0.89[EUR][1000 genomes]
rs12101672	0.81[AFR][1000 genomes]
rs28379098	0.89[EUR][1000 genomes]
rs28415882	0.89[EUR][1000 genomes]
rs28564635	0.81[AFR][1000 genomes]
rs28594952	0.89[EUR][1000 genomes]
rs28748021	0.81[AFR][1000 genomes]
rs55764190	0.89[EUR][1000 genomes]
rs56087519	0.89[EUR][1000 genomes]
rs9920876	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv569907	chr15:72154000-72215065	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv569908	chr15:72154000-72218036	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv457195	chr15:72177659-72250741	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv569909	chr15:72177659-72250741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72114600-72190600	Weak transcription	Pancreas	Pancrea
2	chr15:72122200-72189400	Weak transcription	Right Ventricle	heart
3	chr15:72122400-72195000	Weak transcription	NHEK	skin
4	chr15:72122600-72185200	Weak transcription	Esophagus	oesophagus
5	chr15:72122600-72195800	Weak transcription	Gastric	stomach
6	chr15:72131800-72192800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:72142600-72183400	Weak transcription	Brain Angular Gyrus	brain
8	chr15:72142600-72189600	Weak transcription	NHLF	lung
9	chr15:72142600-72199200	Weak transcription	Hela-S3	cervix
10	chr15:72142800-72184800	Weak transcription	A549	lung
11	chr15:72142800-72190200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:72143000-72190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:72143000-72190600	Weak transcription	Colonic Mucosa	Colon
14	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:72145400-72190600	Weak transcription	Spleen	Spleen
16	chr15:72145600-72182800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:72145600-72184800	Weak transcription	Lung	lung
18	chr15:72149200-72186000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:72153200-72189600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:72161000-72211000	Weak transcription	Small Intestine	intestine
21	chr15:72162600-72187600	Strong transcription	Placenta	Placenta
22	chr15:72164000-72190600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:72164000-72190600	Weak transcription	Aorta	Aorta
24	chr15:72164000-72218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:72165400-72190800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:72166200-72181800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:72167000-72197800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:72167600-72181600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:72168800-72190800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:72170200-72194000	Weak transcription	Fetal Intestine Small	intestine
31	chr15:72171200-72192600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:72172400-72192000	Weak transcription	Thymus	Thymus
33	chr15:72172600-72185200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:72172600-72190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:72172800-72183000	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:72172800-72186000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr15:72172800-72190000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:72172800-72190800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:72172800-72190800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:72173000-72183000	Weak transcription	Brain Substantia Nigra	brain
41	chr15:72173000-72184800	Weak transcription	Primary T cells from cord blood	blood
42	chr15:72173000-72190000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:72173000-72200600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:72173200-72181200	Weak transcription	Fetal Heart	heart
45	chr15:72173200-72190000	Weak transcription	HUVEC	blood vessel
46	chr15:72173200-72190600	Weak transcription	Dnd41	blood
47	chr15:72174400-72180600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr15:72174800-72189800	Weak transcription	Fetal Brain Male	brain
49	chr15:72175200-72184600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr15:72175400-72185200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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