Variant report

Variant	rs55920189
Chromosome Location	chr6:166783037-166783038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166751783..166754110-chr6:166780871..166783189,2	K562	blood:
2	chr6:166755930..166757619-chr6:166781019..166784045,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6456080	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913353	1.00[AMR][1000 genomes]
rs6933688	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6941755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265154	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166773200-166794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:166773400-166790000	Weak transcription	Fetal Brain Male	brain
3	chr6:166774400-166790600	Weak transcription	Psoas Muscle	Psoas
4	chr6:166774800-166783400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:166774800-166784000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:166774800-166787200	Weak transcription	Esophagus	oesophagus
7	chr6:166774800-166795000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:166775000-166793800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:166775200-166788400	Weak transcription	HMEC	breast
10	chr6:166775400-166785400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:166775400-166787000	Weak transcription	Fetal Kidney	kidney
12	chr6:166775800-166794800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:166776200-166784600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:166777400-166795400	Weak transcription	Gastric	stomach
15	chr6:166777800-166788400	Weak transcription	NHEK	skin
16	chr6:166778200-166790600	Weak transcription	Right Ventricle	heart
17	chr6:166778200-166790800	Weak transcription	Fetal Brain Female	brain
18	chr6:166778200-166792800	Weak transcription	Aorta	Aorta
19	chr6:166778200-166794600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:166778200-166795000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:166778400-166784000	Weak transcription	Spleen	Spleen
22	chr6:166778400-166786600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:166778400-166790600	Weak transcription	Pancreas	Pancrea
24	chr6:166778400-166792600	Weak transcription	Lung	lung
25	chr6:166778400-166794600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:166778400-166794600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:166778400-166794600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:166778400-166794800	Weak transcription	Fetal Stomach	stomach
29	chr6:166778400-166795000	Weak transcription	Colonic Mucosa	Colon
30	chr6:166778600-166794600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:166778600-166794600	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:166778800-166785000	Weak transcription	Placenta	Placenta
33	chr6:166779000-166783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:166779200-166788400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr6:166779200-166793400	Weak transcription	K562	blood
36	chr6:166779400-166783200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:166779400-166783400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:166779400-166794600	Weak transcription	HSMM	muscle
39	chr6:166779400-166794800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:166779600-166783400	Weak transcription	Right Atrium	heart
41	chr6:166779600-166785400	Weak transcription	Fetal Muscle Leg	muscle
42	chr6:166779600-166785800	Weak transcription	Primary B cells from cord blood	blood
43	chr6:166779600-166789200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:166779600-166790600	Weak transcription	Left Ventricle	heart
45	chr6:166779600-166791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:166779600-166791800	Weak transcription	Brain Germinal Matrix	brain
47	chr6:166779600-166792800	Weak transcription	Ovary	ovary
48	chr6:166779600-166794600	Weak transcription	Brain Angular Gyrus	brain
49	chr6:166779600-166794600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:166779600-166794600	Weak transcription	Brain Substantia Nigra	brain

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