Variant report

Variant	rs73265128
Chromosome Location	chr6:166776869-166776870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166754928..166757312-chr6:166776531..166780402,3	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55920189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6456080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913353	1.00[AMR][1000 genomes]
rs6933688	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6941755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265154	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv1797072	chr6:166766142-166782143	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166757000-166779200	Weak transcription	Right Atrium	heart
2	chr6:166765600-166777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:166765800-166778000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:166769400-166777800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:166773200-166794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:166773400-166790000	Weak transcription	Fetal Brain Male	brain
7	chr6:166773800-166777800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:166774000-166777600	Weak transcription	Aorta	Aorta
9	chr6:166774000-166778000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:166774000-166780200	Weak transcription	Small Intestine	intestine
11	chr6:166774400-166777800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:166774400-166778000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:166774400-166778000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:166774400-166778000	Weak transcription	HUVEC	blood vessel
15	chr6:166774400-166778200	Weak transcription	NH-A	brain
16	chr6:166774400-166778400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:166774400-166790600	Weak transcription	Psoas Muscle	Psoas
18	chr6:166774600-166777800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:166774800-166777600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:166774800-166777800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:166774800-166777800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:166774800-166778000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:166774800-166778000	Weak transcription	K562	blood
24	chr6:166774800-166778400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:166774800-166778600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:166774800-166783400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:166774800-166784000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:166774800-166787200	Weak transcription	Esophagus	oesophagus
29	chr6:166774800-166795000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:166775000-166777200	Weak transcription	Primary B cells from cord blood	blood
31	chr6:166775000-166777800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:166775000-166777800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:166775000-166777800	Weak transcription	HSMM	muscle
34	chr6:166775000-166777800	Weak transcription	NHDF-Ad	bronchial
35	chr6:166775000-166778000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:166775000-166778000	Weak transcription	Osteobl	bone
37	chr6:166775000-166778200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:166775000-166778200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:166775000-166778600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:166775000-166793800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:166775200-166777800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:166775200-166777800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:166775200-166788400	Weak transcription	HMEC	breast
44	chr6:166775400-166785400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:166775400-166787000	Weak transcription	Fetal Kidney	kidney
46	chr6:166775600-166777000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr6:166775600-166777800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:166775600-166778400	Strong transcription	Fetal Stomach	stomach
49	chr6:166775600-166778400	Strong transcription	Pancreas	Pancrea
50	chr6:166775600-166778600	Enhancers	Fetal Heart	heart

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