Variant report

Variant	rs55923259
Chromosome Location	chr3:24022283-24022284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23958659..23961020-chr3:24021622..24024161,2	K562	blood:
2	chr3:24014593..24017438-chr3:24020273..24022984,2	K562	blood:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73036791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73036794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73036802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73038519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73038548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23989200-24033200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:23994000-24022800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:24004000-24022600	Weak transcription	Aorta	Aorta
4	chr3:24004000-24022600	Weak transcription	Pancreas	Pancrea
5	chr3:24004000-24023400	Weak transcription	Gastric	stomach
6	chr3:24004000-24023800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:24004200-24022600	Weak transcription	Right Ventricle	heart
8	chr3:24005200-24022600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:24005600-24032800	Weak transcription	NH-A	brain
10	chr3:24007800-24023200	Weak transcription	Colonic Mucosa	Colon
11	chr3:24009800-24022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:24010200-24022400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:24010200-24023800	Weak transcription	Psoas Muscle	Psoas
14	chr3:24010200-24028800	Weak transcription	HUVEC	blood vessel
15	chr3:24010400-24024000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:24011600-24022400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:24013200-24022600	Weak transcription	Fetal Stomach	stomach
18	chr3:24013800-24022400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:24014600-24022600	Weak transcription	Fetal Thymus	thymus
20	chr3:24018200-24022400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:24018200-24022400	Strong transcription	Adipose Nuclei	Adipose
22	chr3:24018200-24022400	Weak transcription	NHEK	skin
23	chr3:24018200-24022600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:24018200-24022600	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:24018200-24022600	Weak transcription	Esophagus	oesophagus
26	chr3:24018200-24022600	Weak transcription	Spleen	Spleen
27	chr3:24018200-24022600	Weak transcription	HMEC	breast
28	chr3:24018200-24022800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:24018200-24022800	Weak transcription	Dnd41	blood
30	chr3:24018200-24023600	Weak transcription	Lung	lung
31	chr3:24018200-24024000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:24018200-24024400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:24018200-24024600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:24018200-24033200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:24018400-24022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr3:24018400-24022600	Weak transcription	Fetal Intestine Small	intestine
37	chr3:24018400-24022600	Weak transcription	Left Ventricle	heart
38	chr3:24018400-24022800	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:24018400-24024800	Weak transcription	GM12878-XiMat	blood
40	chr3:24018400-24032200	Weak transcription	Fetal Brain Female	brain
41	chr3:24018400-24032400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr3:24019200-24024000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr3:24019400-24022400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:24019400-24022400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr3:24019400-24022400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:24019400-24022600	Weak transcription	Stomach Mucosa	stomach
47	chr3:24019400-24022800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr3:24019400-24024000	Weak transcription	Ovary	ovary
49	chr3:24019400-24024200	Weak transcription	Brain Substantia Nigra	brain
50	chr3:24019400-24025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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