Variant report

Variant	rs73036794
Chromosome Location	chr3:24002538-24002539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:24002152-24002870	HepG2	liver:	n/a	n/a
2	STAT3	chr3:24002497-24002976	MCF10A-Er-Src	breast:	n/a	chr3:24002770-24002781

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:23958060..23960570-chr3:24001366..24003390,2	MCF-7	breast:
2	chr3:23961452..23965156-chr3:23999587..24004253,5	MCF-7	breast:
3	chr3:23985538..23993367-chr3:23993730..24003801,19	MCF-7	breast:
4	chr3:23957666..23960056-chr3:24002459..24005519,4	MCF-7	breast:
5	chr3:23987978..23989944-chr3:24002378..24005441,3	K562	blood:
6	chr3:23967304..23969953-chr3:24001242..24004073,2	K562	blood:
7	chr3:23967043..23969562-chr3:24002136..24003656,2	MCF-7	breast:

No data

Variant related genes	Relation type
NR1D2	TF binding region
ENSG00000197885	Chromatin interaction
ENSG00000174748	Chromatin interaction
ENSG00000174738	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11917128	0.97[EUR][1000 genomes]
rs28510558	0.84[EUR][1000 genomes]
rs55824572	0.97[EUR][1000 genomes]
rs55923259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58241520	0.97[EUR][1000 genomes]
rs73036778	0.97[EUR][1000 genomes]
rs73036780	0.97[EUR][1000 genomes]
rs73036786	0.97[EUR][1000 genomes]
rs73036791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73036802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23988200-24003600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:23988400-24003000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:23988400-24003400	Weak transcription	Fetal Kidney	kidney
4	chr3:23989200-24003000	Weak transcription	Fetal Thymus	thymus
5	chr3:23989200-24007400	Weak transcription	Fetal Brain Female	brain
6	chr3:23989200-24018000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:23989200-24020600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:23989200-24033200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:23989600-24003400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:23989600-24003400	Weak transcription	Esophagus	oesophagus
11	chr3:23989600-24003600	Weak transcription	Colonic Mucosa	Colon
12	chr3:23989800-24017800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:23992000-24007400	Weak transcription	Thymus	Thymus
14	chr3:23992400-24003400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:23992400-24003400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr3:23992400-24003400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:23992400-24017400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:23993600-24009400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:23993600-24017800	Weak transcription	Brain Germinal Matrix	brain
20	chr3:23994000-24022800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:23995200-24003200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:23995200-24003200	Weak transcription	Dnd41	blood
23	chr3:23995200-24003400	Weak transcription	GM12878-XiMat	blood
24	chr3:23995600-24003200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr3:23995800-24003000	Weak transcription	HepG2	liver
26	chr3:23996000-24012600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:23996200-24004800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:23996200-24009400	Weak transcription	Psoas Muscle	Psoas
29	chr3:23996200-24011200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:23996200-24021200	Weak transcription	Small Intestine	intestine
31	chr3:23996400-24006200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:23996800-24003000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:23996800-24003000	Weak transcription	Right Ventricle	heart
34	chr3:23996800-24003200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:23997200-24012200	Strong transcription	Liver	Liver
36	chr3:23997400-24007400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:23998200-24003600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:23998400-24003400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:23999000-24007400	Strong transcription	Adipose Nuclei	Adipose
40	chr3:23999200-24011600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:23999400-24002600	Enhancers	Stomach Mucosa	stomach
42	chr3:23999400-24005000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr3:23999400-24005000	Strong transcription	Fetal Lung	lung
44	chr3:23999800-24003000	Weak transcription	Spleen	Spleen
45	chr3:23999800-24019600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:24000000-24002800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:24000000-24003400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:24000000-24007400	Weak transcription	Right Atrium	heart
49	chr3:24000000-24020400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr3:24000200-24002800	Weak transcription	Fetal Intestine Small	intestine

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