Variant report

Variant	rs559246653
Chromosome Location	chr11:67806168-67806169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:174)
CpG islands
(count:61)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:174 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:67806109-67806769	GM12892	blood:	n/a	n/a
2	NR2F2	chr11:67805554-67806651	K562	blood:	n/a	n/a
3	RCOR1	chr11:67806064-67808274	IMR90	lung:	n/a	n/a
4	ELF1	chr11:67806056-67806645	HepG2	liver:	n/a	n/a
5	CCNT2	chr11:67805793-67806848	K562	blood:	n/a	chr11:67806427-67806436
6	YY1	chr11:67805420-67806783	HepG2	liver:	n/a	chr11:67805655-67805666 chr11:67806427-67806436 chr11:67806424-67806438
7	POLR2A	chr11:67806140-67806753	K562	blood:	n/a	n/a
8	POLR2A	chr11:67805531-67806728	HepG2	liver:	n/a	n/a
9	POLR2A	chr11:67806151-67806756	MCF10A-Er-Src	breast:	n/a	n/a
10	PML	chr11:67806102-67806967	K562	blood:	n/a	n/a
11	SMARCB1	chr11:67805474-67806918	Hela-S3	cervix:	n/a	chr11:67805613-67805622
12	TCF12	chr11:67805577-67806235	MCF-7	breast:	n/a	chr11:67805897-67805904 chr11:67805928-67805938
13	RAD21	chr11:67806048-67806626	ECC-1	luminal epithelium:	n/a	chr11:67806289-67806301
14	POLR2A	chr11:67806083-67806794	HCT-116	colon:	n/a	n/a
15	ELF1	chr11:67806050-67806667	MCF-7	breast:	n/a	n/a
16	TBP	chr11:67805513-67806669	HepG2	liver:	n/a	n/a
17	POLR2A	chr11:67806160-67806754	NB4	blood:	n/a	n/a
18	CTCF	chr11:67806160-67806310	GM12869	blood:	n/a	n/a
19	TCF12	chr11:67805624-67806779	ECC-1	luminal epithelium:	n/a	chr11:67805897-67805904 chr11:67805928-67805938
20	POLR2A	chr11:67806146-67806751	K562	blood:	n/a	n/a
21	YY1	chr11:67806146-67806558	A549	lung:	n/a	chr11:67806427-67806436 chr11:67806424-67806438
22	POLR2A	chr11:67806116-67806626	A549	lung:	n/a	n/a
23	POLR2A	chr11:67806092-67806682	H1-hESC	embryonic stem cell:	n/a	n/a
24	RUNX3	chr11:67806131-67807082	GM12878	blood:	n/a	n/a
25	SMC3	chr11:67805771-67806728	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr11:67805800-67806818	MCF-7	breast:	n/a	n/a
27	GTF2F1	chr11:67806145-67806555	K562	blood:	n/a	n/a
28	JUND	chr11:67805950-67806571	A549	lung:	n/a	chr11:67806177-67806188
29	TCF12	chr11:67805644-67806934	ECC-1	luminal epithelium:	n/a	chr11:67805897-67805904 chr11:67805928-67805938
30	POLR2A	chr11:67806161-67807071	GM10847	blood:	n/a	n/a
31	POLR2A	chr11:67805509-67806844	A549	lung:	n/a	n/a
32	POLR2A	chr11:67804507-67808204	HepG2	liver:	n/a	n/a
33	GATA3	chr11:67805528-67806259	MCF-7	breast:	n/a	n/a
34	POLR2A	chr11:67806149-67807065	GM18526	blood:	n/a	n/a
35	POLR2A	chr11:67806162-67806700	GM12891	blood:	n/a	n/a
36	POLR2A	chr11:67806152-67807050	GM15510	blood:	n/a	n/a
37	FOXP2	chr11:67806123-67806872	PFSK-1	brain:	n/a	n/a
38	POLR2A	chr11:67804142-67806889	GM12892	blood:	n/a	n/a
39	POLR2A	chr11:67804126-67807123	GM12878	blood:	n/a	n/a
40	EP300	chr11:67806028-67806671	A549	lung:	n/a	chr11:67806472-67806485 chr11:67806525-67806541 chr11:67806644-67806660 chr11:67806596-67806612
41	POLR2A	chr11:67805867-67806927	GM19193	blood:	n/a	n/a
42	POLR2A	chr11:67805890-67806917	HUVEC	blood vessel:	n/a	n/a
43	JUND	chr11:67805717-67806905	K562	blood:	n/a	chr11:67806177-67806188
44	TAL1	chr11:67805736-67806849	K562	blood:	n/a	chr11:67805767-67805776
45	TAF1	chr11:67805528-67806703	HepG2	liver:	n/a	n/a
46	POLR2A	chr11:67806136-67806731	A549	lung:	n/a	n/a
47	CEBPD	chr11:67805455-67806690	HepG2	liver:	n/a	n/a
48	POLR2A	chr11:67805432-67806880	GM12878	blood:	n/a	n/a
49	POLR2A	chr11:67806103-67806745	A549	lung:	n/a	n/a
50	POLR2A	chr11:67804335-67807010	U87	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:67806118-67806168	HL-60	blood:	n/a
2	chr11:67806118-67806168	HEEpiC	esophagus:	n/a
3	chr11:67806118-67806168	K562	blood:	n/a
4	chr11:67806118-67806168	RPTEC	kidney:	n/a
5	chr11:67806118-67806168	HAEpiC	amniotic membrane:	n/a
6	chr11:67806118-67806168	HRCEpiC	kidney:	n/a
7	chr11:67806118-67806168	SKMC	muscle:	n/a
8	chr11:67806118-67806168	HUVEC	blood vessel:	n/a
9	chr11:67806118-67806168	HMEC	breast:	n/a
10	chr11:67806118-67806168	GM19239	blood:	n/a
11	chr11:67806118-67806168	LNCaP	prostate:	n/a
12	chr11:67806118-67806168	HepG2	liver:	n/a
13	chr11:67806118-67806168	AG10803	skin:	n/a
14	chr11:67806118-67806168	SAEC	small airway:	n/a
15	chr11:67806118-67806168	MCF10A-Er-Src	breast:	n/a
16	chr11:67806118-67806168	HCM	heart:	n/a
17	chr11:67806118-67806168	HCT-116	colon:	n/a
18	chr11:67806118-67806168	ovcar-3	ovarian:	n/a
19	chr11:67806118-67806168	GM12891	blood:	n/a
20	chr11:67806118-67806168	SK-N-MC	brain:	n/a
21	chr11:67806118-67806168	AoSMC	blood vessel:	n/a
22	chr11:67806118-67806168	T-47D	breast:	n/a
23	chr11:67806118-67806168	NHDF-neo	bronchial:	n/a
24	chr11:67806118-67806168	U87	brain:	n/a
25	chr11:67806118-67806168	GM06990	blood:	n/a
26	chr11:67806118-67806168	NT2-D1	testis:	n/a
27	chr11:67806118-67806168	Hela-S3	cervix:	n/a
28	chr11:67806118-67806168	ProgFib	skin:	n/a
29	chr11:67806118-67806168	NH-A	brain:	n/a
30	chr11:67806118-67806168	HPAEpiC	pulmonary alveolar:	n/a
31	chr11:67806118-67806168	AG04450	lung:	fetal
32	chr11:67806118-67806168	Jurkat	blood:	n/a
33	chr11:67806118-67806168	HRPEpiC	eye:	n/a
34	chr11:67806118-67806168	Hepatocyte	liver:	n/a
35	chr11:67806118-67806168	MCF-7	breast:	n/a
36	chr11:67806118-67806168	HIPEpiC	eye:	n/a
37	chr11:67806118-67806168	PFSK-1	brain:	n/a
38	chr11:67806118-67806168	AG09309	skin:	n/a
39	chr11:67806118-67806168	NB4	blood:	n/a
40	chr11:67806118-67806168	HRE	kidney:	n/a
41	chr11:67806118-67806168	ECC-1	luminal epithelium:	n/a
42	chr11:67806118-67806168	HCPEpiC	choroid plexus:	n/a
43	chr11:67806118-67806168	BJ	skin:	n/a
44	chr11:67806118-67806168	SK-N-SH	brain:	n/a
45	chr11:67806118-67806168	PANC-1	pancreas:	n/a
46	chr11:67806118-67806168	GM12878	blood:	n/a
47	chr11:67806118-67806168	BE2_C	brain:	n/a
48	chr11:67806118-67806168	AG09319	gingival:	n/a
49	chr11:67806118-67806168	HNPCEpiC	eye:	n/a
50	chr11:67806118-67806168	CMK	blood:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67805173..67809189-chr11:67886289..67889765,4	K562	blood:
2	chr11:67803641..67806455-chr11:67892940..67895598,3	MCF-7	breast:
3	chr11:67805993..67806840-chr3:73160072..73160591,2	Hela-S3	cervix:
4	chr11:67803003..67807692-chr11:67979461..67982180,5	MCF-7	breast:
5	chr11:67805971..67806654-chr8:126442470..126443020,2	Hela-S3	cervix:
6	chr11:67770218..67773172-chr11:67805064..67808057,3	K562	blood:
7	chr11:67785578..67786397-chr11:67805432..67806299,2	MCF-7	breast:
8	chr11:67803608..67807840-chr11:67979633..67982182,3	K562	blood:
9	chr11:67805532..67808187-chr11:67887312..67890096,4	MCF-7	breast:
10	chr11:67805173..67807792-chr11:67887405..67889765,3	K562	blood:
11	chr11:67791829..67792701-chr11:67805432..67806435,3	MCF-7	breast:
12	chr11:67785486..67786541-chr11:67805426..67806312,6	MCF-7	breast:
13	chr11:67785486..67786448-chr11:67805426..67806286,4	MCF-7	breast:

No data

Variant related genes	Relation type
TCIRG1	TF binding region
TCIRG1	CpG island
ENSG00000223247	Chromatin interaction
ENSG00000173334	Chromatin interaction
ENSG00000110066	Chromatin interaction
ENSG00000110721	Chromatin interaction
ENSG00000255236	Chromatin interaction
ENSG00000006534	Chromatin interaction
ENSG00000110057	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036101	chr11:67346813-67828351	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv541079	chr11:67346813-67828351	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
3	nsv468606	chr11:67352689-67816936	Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv555269	chr11:67352689-67816936	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
6	esv2757450	chr11:67472905-67891289	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
7	esv2759835	chr11:67472905-67891289	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
8	esv2758275	chr11:67524937-67859490	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
9	nsv469856	chr11:67639037-67859490	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
10	nsv482760	chr11:67639037-67859490	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
11	nsv1047567	chr11:67747160-67819790	Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
12	nsv8836	chr11:67752879-67819799	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
13	nsv897836	chr11:67757350-67816936	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
14	nsv897837	chr11:67757350-67821036	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
15	nsv897838	chr11:67757350-67833543	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
16	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
17	nsv1050471	chr11:67764068-67821610	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
18	nsv468615	chr11:67765056-67816936	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
19	nsv555278	chr11:67765056-67816936	Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
20	nsv897841	chr11:67765056-67816936	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv469964	chr11:67765056-67821036	Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	nsv897842	chr11:67765056-67821036	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
23	nsv897843	chr11:67765056-67833543	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
24	nsv1046054	chr11:67768796-67819790	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
25	nsv897845	chr11:67774231-67821036	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
26	nsv555279	chr11:67789553-67816936	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
27	nsv897848	chr11:67789837-67816936	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
28	nsv897849	chr11:67789837-67821036	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
29	nsv555280	chr11:67793014-67816936	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
30	nsv897851	chr11:67793448-67821036	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
31	nsv897852	chr11:67795066-67833543	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
32	nsv555281	chr11:67796691-67821036	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
33	nsv555282	chr11:67798567-67818325	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
34	nsv555283	chr11:67804074-67816936	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	10 gene(s)	inside rSNPs	diseases
35	nsv897853	chr11:67804074-67817876	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
36	nsv897854	chr11:67805476-67818325	Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
37	nsv897855	chr11:67805563-67842369	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67799200-67806200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:67799800-67806400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:67802000-67807400	Weak transcription	Dnd41	blood
4	chr11:67803400-67806200	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:67803600-67806200	Enhancers	Primary B cells from cord blood	blood
6	chr11:67803600-67806200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr11:67803600-67806400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr11:67803600-67806400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr11:67803800-67806200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:67804000-67807400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:67804400-67806200	Enhancers	HUVEC	blood vessel
12	chr11:67804600-67806200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:67804600-67806200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:67804800-67806200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:67805000-67806200	Enhancers	Brain Substantia Nigra	brain
16	chr11:67805000-67806200	Enhancers	Gastric	stomach
17	chr11:67805200-67806200	Flanking Active TSS	Hela-S3	cervix
18	chr11:67805200-67808000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr11:67805200-67808800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr11:67805400-67806200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:67805400-67806200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:67805400-67806200	Weak transcription	Thymus	Thymus
23	chr11:67805400-67807800	Flanking Active TSS	Liver	Liver
24	chr11:67805400-67808200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:67805400-67808600	Enhancers	Fetal Heart	heart
26	chr11:67805600-67806200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:67805600-67806200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:67805600-67806200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:67805600-67806200	Enhancers	Small Intestine	intestine
30	chr11:67805600-67806200	Flanking Active TSS	A549	lung
31	chr11:67805600-67806200	Flanking Active TSS	K562	blood
32	chr11:67805600-67806400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr11:67805600-67806400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:67805600-67806400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:67805600-67806400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr11:67805600-67808800	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr11:67805800-67806200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:67805800-67806200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:67805800-67806200	Enhancers	Primary T cells from cord blood	blood
40	chr11:67805800-67806200	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr11:67805800-67806200	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr11:67805800-67806200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr11:67805800-67806200	Flanking Active TSS	Lung	lung
44	chr11:67805800-67806200	Flanking Active TSS	Ovary	ovary
45	chr11:67805800-67806200	Flanking Active TSS	NHLF	lung
46	chr11:67805800-67806400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr11:67805800-67806400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr11:67805800-67806400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:67805800-67806400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:67805800-67806400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links