The 2.0 version of rSNPBase

Variant report

Variant rs55927664
Chromosome Location chr13:97876838-97876839
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:97873400-97877600 Active TSS Brain Angular Gyrus brain
2 chr13:97873800-97877000 Active TSS A549 lung
3 chr13:97873800-97877600 Active TSS Stomach Smooth Muscle stomach
4 chr13:97873800-97877800 Active TSS Brain Cingulate Gyrus brain
5 chr13:97873800-97878000 Active TSS Brain Hippocampus Middle brain
6 chr13:97873800-97878400 Active TSS Duodenum Smooth Muscle Duodenum
7 chr13:97873800-97878400 Active TSS Rectal Smooth Muscle rectum
8 chr13:97873800-97879000 Active TSS Pancreatic Islets Pancreatic Islet
9 chr13:97874000-97877200 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
10 chr13:97874000-97877200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr13:97874000-97877200 Active TSS HSMM muscle
12 chr13:97874000-97877400 Active TSS NHLF lung
13 chr13:97874000-97877800 Active TSS Breast Myoepithelial Primary Cells Breast
14 chr13:97874000-97877800 Active TSS Ovary ovary
15 chr13:97874000-97878000 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
16 chr13:97874000-97879400 Active TSS K562 blood
17 chr13:97874200-97877200 Active TSS Brain Anterior Caudate brain
18 chr13:97874200-97877200 Active TSS Thymus Thymus
19 chr13:97874200-97877400 Active TSS Brain Substantia Nigra brain
20 chr13:97874200-97877800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr13:97874200-97877800 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
22 chr13:97874200-97877800 Active TSS Aorta Aorta
23 chr13:97874200-97877800 Active TSS Left Ventricle heart
24 chr13:97874200-97877800 Active TSS Lung lung
25 chr13:97874200-97877800 Active TSS Psoas Muscle Psoas
26 chr13:97874200-97877800 Active TSS Right Atrium heart
27 chr13:97874200-97878000 Active TSS Brain Dorsolateral Prefrontal Cortex brain
28 chr13:97874200-97878400 Active TSS Right Ventricle heart
29 chr13:97874200-97878600 Active TSS Brain Inferior Temporal Lobe brain
30 chr13:97874400-97877000 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr13:97874400-97877000 Active TSS Hela-S3 cervix
32 chr13:97874400-97877000 Active TSS NHDF-Ad bronchial
33 chr13:97874400-97877200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr13:97874400-97877200 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
35 chr13:97874400-97877200 Active TSS Colon Smooth Muscle Colon
36 chr13:97874400-97877200 Active TSS Skeletal Muscle Male skeletal muscle
37 chr13:97874400-97877400 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr13:97874400-97877400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr13:97874400-97877400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
40 chr13:97874400-97877400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr13:97874400-97877400 Active TSS HSMMtube muscle
42 chr13:97874400-97877600 Active TSS Fetal Lung lung
43 chr13:97874400-97877600 Active TSS Fetal Stomach stomach
44 chr13:97874400-97877600 Active TSS Stomach Mucosa stomach
45 chr13:97874400-97877600 Active TSS NHEK skin
46 chr13:97874400-97877800 Active TSS GM12878-XiMat blood
47 chr13:97874400-97878200 Bivalent/Poised TSS HepG2 liver
48 chr13:97874600-97877200 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
49 chr13:97874600-97877200 Active TSS Placenta Amnion Placenta Amnion
50 chr13:97874600-97877400 Active TSS Liver Liver

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Last update: Aug 31, 2015